HABITAT AND COMMUNITY ECOLOGY OF CANADA LYNX ACROSS INTENSIVELY MANAGED FOREST LANDSCAPES by Shannon Michael Crowley B.Sc., University of Alaska Southeast, 1999 M.Sc., University of Northern British Columbia, 2010 THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY IN NATURAL RESOURCES AND ENVIRONMENTAL STUDIES UNIVERSITY OF NORTHERN BRITISH COLUMBIA August 2024 © Shannon M. Crowley, 2024 Abstract In the subboreal forests of central British Columbia, large-scale and rapid timber harvest has resulted in fundamental changes to the age distribution of forests. Canada lynx (Lynx canadensis) is a habitat and prey specialist on snowshoe hare (Lepus americanus) that is likely sensitive to broad-scale habitat change. It is unclear how large-scale timber harvest may influence community dynamics, including the much studied lynx-hare predator-prey cycle. The density and associated population cycles of Canada lynx differ substantially between northern and southern populations with few studies of the population or habitat ecology of lynx inhabiting southern boreal forests. My research addressed gaps in our understanding of the population, community, and habitat ecology of Canada lynx in subboreal forests of British Columbia. Specifically, I investigated the ecological factors influencing the habitat use, community interactions, and survey methods of Canada lynx during two contrasting periods of cyclic lynx and hare abundance and across a landscape with widespread and rapid forest harvesting. In Chapter 2, I compared habitat selection at two different movement scales using GPS-collared lynx and American marten as well as camera data collected during two contrasting periods of prey abundance. I found that camera traps, in general, reflected the habitat use of GPS-collared lynx and marten. Mid-level and top-level vegetation cover were important predictors of habitat use for both marten and lynx, but with opposite directional influences. Lynx and marten demonstrated differential use of habitat defined by forest age and structure suggesting that each species would serve as a unique indicator of forest condition and change. My objective in Chapter 3 was to determine if a combination of camera traps, abundance estimates, and behavioural cues could be used to monitor cyclic population trends. I found that lynx behaviours and relative abundance were strongly correlated. Consistent with my predictions, years with II higher lynx and hare abundance were characterized by increases in cheek-rubbing, scentmarking, and grouping behaviours. Population indices and estimates, in combination with behavioural observations for lynx, provided insights into the ecological drivers of population trends. In Chapter 4, I used camera traps to investigate the influence of sympatric carnivores (coyote, fisher, wolverine) and prey (snowshoe hare, red squirrel) on the habitat use and cooccurrence of Canada lynx. I found that lynx occurrences mirrored the cyclic change in hare abundance, while the number of sympatric mustelid species and the occurrences of each species increased during the low period. The co-occurrence of lynx with other sympatric carnivores increased at a time of prey scarcity suggesting predator populations in subboreal forests may be in a dynamic state of habitat overlap dependent on cyclic prey abundance. In total, my research provides new insights on the habitat, behavioural, and community ecology of lynx found in subboreal forests that are experiencing rapid change. The ecology of lynx in that system is a dynamic response to not only change in forest structure, but also the abundance of their primary prey, snowshoe hare. Also, my results provide guidance on the appropriate application and possible biases of a range of methods for monitoring the distribution and abundance of lynx. III Table of Contents ABSTRACT...................................................................................................................................................... II LIST OF TABLES ....................................................................................................................................... VII LIST OF FIGURES......................................................................................................................................... X LIST OF APPENDICES ............................................................................................................................ XIII ACKNOWLEDGEMENTS ............................................................................................................................ 1 CHAPTER 1 ...................................................................................................................................................... 2 INTRODUCTION ............................................................................................................................................ 2 BACKGROUND .................................................................................................................................................... 2 CANADA LYNX ECOLOGY .................................................................................................................................... 6 RESEARCH OBJECTIVES ..................................................................................................................................... 10 RESEARCH METHODS ............................................................................................................................. 12 STUDY AREA .................................................................................................................................................... 12 DATA COLLECTION ........................................................................................................................................... 15 Camera traps and hair snares ................................................................................................................. 15 GPS collars ............................................................................................................................................ 16 Habitat covariates .................................................................................................................................. 17 CHAPTER 2: LINKING ECOLOGICAL PROCESSES OF INDIVIDUAL-BASED DATA AND OCCURRENCE SURVEYS: CANADA LYNX AND AMERICAN MARTEN MOVEMENT AND HABITAT SELECTION USING GPS-COLLARS AND CAMERA TRAPS ............................................................................................................................................................. 20 ABSTRACT..................................................................................................................................................... 20 INTRODUCTION .......................................................................................................................................... 21 MATERIALS AND METHODS ................................................................................................................ 25 STUDY AREA .................................................................................................................................................... 25 FIELD DATA COLLECTION ................................................................................................................................. 26 GPS-collared individuals ........................................................................................................................ 26 Camera traps.......................................................................................................................................... 27 Habitat covariates .................................................................................................................................. 28 DATA ANALYSIS ............................................................................................................................................... 30 Movement scales..................................................................................................................................... 30 Habitat selection..................................................................................................................................... 33 RESULTS......................................................................................................................................................... 36 MARTEN CAPTURES .......................................................................................................................................... 36 LYNX CAPTURES............................................................................................................................................... 36 CAMERA TRAPS ................................................................................................................................................ 37 MOVEMENT SCALES.......................................................................................................................................... 37 LYNX WINTER HABITAT MODELS...................................................................................................................... 37 LYNX SNOW-FREE HABITAT MODELS ................................................................................................................ 38 IV MARTEN WINTER HABITAT MODELS .................................................................................................................. 38 DISCUSSION.................................................................................................................................................. 42 CHAPTER 3: BEHAVIOUR AS AN INDICATOR OF CYCLIC TRENDS IN ABUNDANCE OF CANADA LYNX (LYNX CANADENSIS) AND SNOWSHOE HARE (LEPUS AMERICANUS) ............................................................................................................................................. 46 ABSTRACT..................................................................................................................................................... 46 INTRODUCTION .......................................................................................................................................... 47 MATERIALS AND METHODS ................................................................................................................ 51 STUDY AREA .................................................................................................................................................... 51 FIELD DATA COLLECTION ................................................................................................................................. 51 SAMPLING AND ECOLOGICAL VARIABLES .......................................................................................................... 53 N-mixture models.................................................................................................................................... 53 Lynx behaviour ....................................................................................................................................... 54 DATA ANALYSIS ............................................................................................................................................... 55 Population estimates and indices ............................................................................................................ 55 Lynx behaviour ....................................................................................................................................... 58 RESULTS......................................................................................................................................................... 59 CAMERA TRAPS ................................................................................................................................................ 59 POPULATION ESTIMATES AND INDICES............................................................................................................... 60 BEHAVIOUR MODELS ........................................................................................................................................ 63 DISCUSSION.................................................................................................................................................. 69 CHAPTER 4: SHORT-TERM FLUCTUATIONS IN PREY AND ITS INFLUENCE ON A CARNIVORE COMMUNITY: HABITAT CO-OCCURRENCE OF CANADA LYNX AND SYMPATRIC MESOPREDATORS INCREASES FOLLOWING CYCLICAL REDUCTION IN PRIMARY PREY .................................................................................................................................... 75 ABSTRACT..................................................................................................................................................... 75 INTRODUCTION .......................................................................................................................................... 76 MATERIALS AND METHODS ................................................................................................................ 79 STUDY AREA .................................................................................................................................................... 79 FIELD DATA COLLECTION ................................................................................................................................. 81 HABITAT COVARIATES ...................................................................................................................................... 82 DATA ANALYSIS ............................................................................................................................................... 84 RESULTS......................................................................................................................................................... 89 CAMERA TRAP OCCURRENCES .......................................................................................................................... 89 2015–2016 WINTER MODELS ............................................................................................................................ 92 2015–2016 SNOW-FREE MODELS ...................................................................................................................... 92 2020–2021 WINTER MODELS ............................................................................................................................ 93 2020–2021 SNOW-FREE MODELS ...................................................................................................................... 93 V DISCUSSION.................................................................................................................................................. 98 CHAPTER 5: STUDY FINDINGS, MANAGEMENT IMPLICATIONS, AND RECOMMENDATIONS FOR FUTURE RESEARCH ...................................................................... 105 SUMMARY OF RESULTS ................................................................................................................................... 105 ECOLOGICAL IMPLICATIONS ............................................................................................................................ 106 LANDSCAPE CHANGE AND LONG-TERM MONITORING ...................................................................................... 109 STRENGTHS, WEAKNESSES, AND FUTURE RESEARCH ....................................................................................... 110 MANAGEMENT AND CONSERVATION ............................................................................................................... 113 REFERENCES .............................................................................................................................................. 116 APPENDIX 1 ................................................................................................................................................ 142 APPENDIX 2 ................................................................................................................................................ 143 APPENDIX 3 ................................................................................................................................................ 145 VI List of Tables Table 1. Sampling methods and sample sizes for research on the habitat ecology of Canada lynx (Lynx canadensis) in central British Columbia, Canada, 2015–2016 and 2020– 2021……………………………………………………………………………..………..17 Table 2. Variables used in the development of habitat selection models for Canada lynx (Lynx canadensis) and American marten (Martes americana) using camera traps and GPScollared individuals in central British Columbia, Canada, 2015–2016 and 2020–2022...29 Table 3. A priori candidate models (multinomial logistic regression) representing habitat use of Canada lynx (Lynx canadensis) and American marten (Martes americana) using camera traps and GPS-collared individuals in central British Columbia, Canada, 2015–2016 and 2020–2022………………………………………………………………………………..35 Table 4. AICc scores, and AICc weights (w) for the three highest-ranked multinomial logistic regression models representing habitat use of Canada lynx (Lynx canadensis) and American marten (Martes americana) using GPS collars and camera traps in central British Columbia, Canada, 2015–2016 and 2020–2021. Area under the curve (AUC) and standard error (SE) for the receiver operating characteristic represents the predictive accuracy of each model…………………………………………………………………..39 Table 5. Variables used in the development of models predicting abundance (N-mixture models) or behaviours (cheek-rubbing, scent-marking, grouping) of Canada lynx (Lynx canadensis) using camera traps in central British Columbia, Canada, 2015–2016 and 2020–2022………………………………………………………….…………………....55 VII Table 6. A priori candidate models (logistic regression) representing three types of behaviour (cheek-rubbing, scent-marking, grouping) of Canada lynx (Lynx canadensis) at remote camera sites in central British Columbia, Canada, 2015–2016 and 2020–2022...…..….58 Table 7. Density estimates from spatial capture-mark-resight (SCMR) and N-mixture models for Canada lynx (Lynx canadensis) and snowshoe hare (Lepus americanus) using camera traps in central British Columbia, Canada, 2015–2016 and 2020–2022. RSE = relative standard error………………………………………………………….…………………62 Table 8. AICc scores, and AICc weights (w) for logistic regression models predicting Canada lynx (Lynx canadensis) behaviours at camera traps in central British Columbia, Canada, 2014–2016 and 2020–2022. Area under the curve (AUC) and standard error (SE) for the receiver operating characteristic represents the predictive accuracy of each model…….65 Table 9. Spatial and temporal correlations (r) between occurrence rates (OR) generated with camera images, N-mixture (N-mix) abundance estimates, and lynx behaviours for Canada lynx (Lynx canadensis) and snowshoe hare (Lepus americanus) using camera traps in central British Columbia, Canada, 2014–2016 and 2020–2022……………………..…..66 Table 10. Variables used in the development of habitat and co-occurrence models (multinomial logistic regression) for Canada lynx (Lynx canadensis), sympatric mesopredators, and prey at remote camera sites in central British Columbia, Canada, 2015-2016 and 20202021………………………………………………………………………………………84 Table 11. A priori candidate models (multinomial logistic regression) representing habitat use and co-occurrence of Canada lynx (Lynx canadensis), sympatric mesopredators, and prey VIII at remote camera sites in central British Columbia, Canada, 2015–2016 and 2020– 2021…………………………………………………………………………………...….88 Table 12. Total occurrences and occurrences per 100 camera-days (rate) for sympatric mesopredators and prey at camera traps during two contrasting periods of prey abundance in central British Columbia, Canada, 2015–2016 (high) and 2020–2021 (low)…….…...90 Table 13. AICc scores, and AICc weights (w) for multinomial logistic regression models representing habitat use and co-occurrence of Canada lynx (Lynx canadensis), sympatric mesopredators, and prey at remote camera sites in central British Columbia, Canada, 2015–2016 and 2020–2021. Area under the curve (AUC) and standard error (SE) for the receiver operating characteristic represents the predictive accuracy of each model. Shaded value = AUC > .7………………….……………………………..…….………..94 Table 14. Coefficients for top-ranked models illustrating habitat use and co-occurrence by Canada lynx (Lynx canadensis), sympatric mesopredators, and prey at camera sites during two contrasting periods of prey abundance in central British Columbia, Canada, 2015–2016 (high) and 2020–2021 (low). Area under the curve (AUC) for the receiver operating characteristic represents the predictive accuracy of each model. Dark grey = negative association, Light grey = positive association, “●” = significant coefficient, “X” = useful or high model accuracy. …..………………………………………………...…96 IX List of Figures Figure 1. Canada lynx (Lynx canadensis) study area with camera locations and hexagonal grid in in John Prince Research Forest, British Columbia, Canada, 2015–2016 and 2020– 2022……………………………………………………………………………………...14 Figure 2. Camera trap and hair snare site for Canada lynx (Lynx canadensis) and other mesopredators in John Prince Research Forest, British Columbia, Canada, 2015–2016 and 2020–2022.…………….……………………………………………………….……16 Figure 3. Map of study area illustrating camera locations as well as GPS-collar locations representing fast and slow movements by Canada lynx (Lynx canadensis) during the winter period in central British Columbia, Canada, 2015–2016 and 2020–2022. ……....31 Figure 4. Map of study area illustrating camera locations as well as GPS-collar locations representing fast and slow movements by American marten (Martes americana) during the winter period in central British Columbia, Canada, 2015–2016 and 2020–2022. ..…32 Figure 5. Significant coefficients for top-ranked models illustrating habitat use by Canada lynx (Lynx canadensis) during the winter and snow-free periods using GPS collars and camera traps in central British Columbia, Canada, 2015–2016 and 2020–2022. Blue = Camera (2020–2022), Red = Camera (2015–2016), Green = GPS slow movement, Orange = GPS fast movement……………………………………………………………………………40 Figure 6. Significant coefficients for top-ranked models illustrating habitat use by American marten (Martes americana) using GPS collars and camera traps during the winter in central British Columbia, Canada, 2015–2016 and 2020–2022. Blue = Camera data X (2020–2022), Red = Camera data (2015–2016), Green = GPS slow movement, Orange = GPS fast movement……………………………………………….……………………..41 Figure 7. Comparison in trends of relative abundance indices (RAI) and N-mixture abundance estimates with 95% confidence intervals for Canada lynx (Lynx canadensis) using camera traps in central British Columbia, Canada, 2014–2016 and 2020–2022. Spatial capturemark-resight (SCMR) estimates for 2020 and 2022 provide an additional measure for validating estimates of relative abundance from camera images and estimates of abundance from N-mixture models……….……………………………………..………61 Figure 8. Coefficients for top-ranked models illustrating the presence of behaviours (cheekrubbing, scent-marking, and grouping) of Canada lynx (Lynx canadensis) at camera trap sites during contrasting periods of prey abundance in central British Columbia, Canada, 2015–2016 (high) and 2020–2022 (low). MW = mid-winter, LW = late winter, ES = early summer, LS = late summer…………………………………………………..…………..67 Figure 9. Canada lynx (Lynx canadensis) abundance and presence of behaviours (percentage of visits with each behaviour recorded) in each year (cheek-rubbing, scent-marking, and grouping) of Canada lynx (Lynx canadensis) at camera trap sites during contrasting periods of prey abundance in central British Columbia, Canada, 2014–2016 (increasing high) and 2020–2022 (decreasing - low)………………………………………………..68 Figure 10. Example model development and outcomes (multinomial logistic regression) investigating the habitat use and co-occurrence of Canada lynx (Lynx canadensis) and sympatric mesopredators (coyote [Canis latrans], fisher [Pekania pennanti], and wolverine [Gulo gulo]) at camera traps during two contrasting periods of prey abundance XI in central British Columbia, Canada, 2015–2016 (high hare) and 2020–2021 (low hare).……………………………………………………………………………………87 Figure 11. Occurrences per 100 camera-days for sympatric mesopredators and prey at camera traps during two contrasting periods of prey abundance in central British Columbia, Canada, 2015–2016 (high hare) and 2020–2021 (low hare). Top = Winter; Bottom = Snow-free…………………………………………………………………………….….91 Figure 12. Probability of lynx (Lynx canadensis) and wolverine (Gulo gulo) co-occurrence and lynx and fisher (Pekania pennati) co-occurrence, with 95% confidence intervals, as a function of canopy cover (3–10 m and >10 m) at cameras sites during a high and low in snowshoe hare abundance in central British Columbia, Canada, February–April, 2015– 2016 and 2020–2021…………………………………………………………………….97 XII List of Appendices Appendix 1.1. Full model results, AICc scores, and AICc weights (w) for multinomial logistic regression models representing habitat use of Canada lynx (Lynx canadensis) and American marten (Martes americana) using GPS collars and camera traps in central British Columbia, Canada, 2015–2016 and 2020–2021………………………………140 Appendix 2.1. Full model rankings, AICc scores, and AICc weights (w) for N-mixture models predicting abundance of Canada lynx (Lynx canadensis) and snowshoe hare (Lepus americanus) at camera traps in central British Columbia, Canada, 2015–2016 and 2020– 2022…………………………………………………………………………………….141 Appendix 2.2. AICc scores, and AICc weights (w) for spatial-capture mark-resight (SCMR) models estimating Canada lynx (Lynx canadensis) density at camera traps in central British Columbia, Canada, 2020 and 2022………………,…………………………….142 Appendix 3.1. Full model rankings, AICc scores, and AICc weights (w) for multinomial logistic regression models representing habitat use and co-occurrence of Canada lynx (Lynx canadensis), sympatric mesopredators, and prey at camera traps in central British Columbia, Canada during a winter of low hare abundance (2020–2021)..……………143 Appendix 3.2. Full model rankings, AICc scores, and AICc weights (w) for multinomial logistic regression models representing habitat use and co-occurrence of Canada lynx (Lynx canadensis), sympatric mesopredators, and prey at camera traps in central British Columbia, Canada during a winter of high hare abundance (2015–2016)……..………145 Appendix 3.3. Full model rankings, AICc scores, and AICc weights (w) for multinomial logistic regression models representing habitat use and co-occurrence of Canada lynx (Lynx XIII canadensis), sympatric mesopredators, and prey at camera traps in central British Columbia, Canada during a snow-free period of low hare abundance (2020–2021)….147 Appendix 3.4. Full model rankings, AICc scores, and AICc weights (w) for multinomial logistic regression models representing habitat use and co-occurrence of Canada lynx (Lynx canadensis), sympatric mesopredators, and prey at camera traps in central British Columbia, Canada during a snow-free period of high hare abundance (2015–2016)….149 XIV Acknowledgements I would like to thank the members of my committee including Ken Otter, Heather Bryan, and Dale Seip for their guidance and support at every stage of my dissertation. I am greatly indebted to my advisor, Chris Johnson, for helping me grow as a scientist, analyst, and writer. I would like to thank Dexter Hodder for his feedback and long discussions about hare and lynx ecology. My work improved leaps and bounds throughout our chats, and I feel privileged to have him as a colleague. I thank Sue Grainger and the entire JPRF Board of Directors for their support through out this process. I would like to thank Tom Jung for being my external examiner and providing thoughtful feedback. I thank the Habitat Conservation Trust Foundation, Forest Enhancement Society of British Columbia, John Prince Research Forest and University of Northern British Columbia for providing funding to support this project. Tanizul Timber Ltd. provided important funds for acquiring and processing LiDAR data. I thank Steven Murdoch, Lauren Wheelhouse, Morgan Conrad, Amanda Carriere, Gabrielle Aubertin, Max Prince, Jason Mattes, Ronald Monk, and Jonathon Tom for their hard work, helpful discussions, and companionship in the field. I thank the Binche Whut’en, Nak'azdli Whut'en, and Tl’azt’en First Nations for their support of this project within their traditional territory. I cannot overstate how essential the love and support I receive from my family (Val, Willa, and Bren) has been and continues to be in my life. It is inconceivable that I could have made it this far without them. 1 CHAPTER 1 Introduction Background Habitat loss and fragmentation are leading causes of the global decline in biodiversity (Fischer and Lindenmeyer 2007). There is abundant empirical evidence documenting a relationship between habitat change and declines in population abundance, range contraction, reductions in genetic diversity, and altered community dynamics (Lino et al. 2019). However, those relationships can vary greatly depending on species and ecosystem context. Species with larger body mass, terrestrial or arboreal niches, and dependency on forested habitats are often most sensitive to habitat loss and fragmentation (Lino et al. 2019). Habitat specialists and species that range across large areas can be especially vulnerable (Crooks 2002, Fischer and Lindenmayer 2007, Lino et al. 2019). Canada lynx (Lynx canadensis) is a habitat and prey specialist that is likely sensitive to broad-scale habitat change. The influence of large-scale habitat loss and fragmentation on harelynx population cycles is unknown. The synchrony, period, and amplitude of the lynx-hare cycle in the boreal forest is thought to be dependent on large tracts of contiguous forest that facilitate dispersal by Canada lynx and other predators (Krebs et al. 2001, Krebs et al. 2014). Habitat loss/fragmentation and an increase in generalist predators (e.g., coyotes [Canis latrans]) are two hypotheses to explain dampened hare-lynx cycles (Keith 1963, Wolf et al. 1980, Buskirk et al. 2000, McKelvey et al. 2000, Strohm and Tyson 2009). Using a theoretical modeling approach, Vitense et al. (2016) found that both generalist predation and habitat loss can result in stabilizing effects and loss of hare cycles. However, both causes are likely to occur simultaneously in cases 2 where the abundance of generalist predators increase in disturbed landscapes (Buskirk et al. 2000). Landscape disturbance that increases edge habitat may negatively affect hare and lynx populations. The exploration and development of natural resources, including forest harvesting and the exploitation of hydrocarbons, typically increases habitat fragmentation and the density of linear features (i.e., roads, pipelines, seismic lines). In a large mammal system, increases in linear features reduced the efficacy of prey refugia and increased the spatial overlap between predator and prey (DeMars and Boutin 2017). Refugia in dense understory further from edge may also be important for hares during cyclic lows (Wolff 1980, O’Donoghue et al. 1998b). Edge habitat may increase hare exposure to predation by both specialist and generalist predators (Vitense et al. 2016). However, empirical data on the influence of intensive habitat loss and fragmentation on cyclic lynx-hare populations is lacking. Most studies of the hare-lynx cycle have occurred in areas with less human disturbance (Mowat et al. 2000, Krebs et al. 2001, Krebs et al. 2014). Approximately 18 million hectares of British Columbia’s (BC) forests have been affected by a mountain pine beetle (Dendroctonus ponderosae; MPB) epidemic that began in the mid1990s (BC FLNRO 2012). Since 2001, the Allowable Annual Cut (AAC) has been increased to salvage dead and dying lodgepole pine (Pinus contorta) trees. This has resulted in fundamental changes to the age distribution of forests across large portions of central BC with implications for wildlife habitat (FPB 2009). Across central BC, trappers and biologists are concerned that recent accelerated forest harvesting has negatively influenced the abundance and persistence of furbearers, including Canada lynx (Bridger 2015). For example, Bridger et al. (2016) found an 83% decline in the availability of optimal habitat for lynx in areas with rapid salvage harvesting, 3 yet little relationship between the abundance of lynx, as indicated by lynx harvest, and habitat change. That contradiction in findings highlights the need for a better understanding of the relationship between forest change and the habitat needs and population dynamics of lynx. Non-invasive surveys at point locations are used with increasing frequency to monitor wildlife populations. Examples include camera traps, hair snares, and surveys of scat, tracks or other sign (Long et al. 2008). These non-invasive surveys are often used as the basis for management decisions. However, the biases and accuracy of many of these methods are not well understood. Furthermore, bias and accuracy may differ according to species, abundance, or variation in behaviour among populations (e.g., Long et al. 2010, Crowley et al. 2013, Monterroso et al. 2014). This is especially true for forest carnivores due to their behaviour (i.e., elusiveness, low densities) and habitats (vegetation that obscures visibility) that have historically limited survey options (Long et al. 2008). Historically, Canada lynx have been monitored with hair snares or snow tracks, and only more recently with camera traps (McDaniel et al. 2000, Squires et al. 2012, Crowley et al. 2017, Doran-Myers et al. 2021). During the last two decades there has been an increase in the use of camera traps to measure population-level patterns of occurrence, distribution, and abundance of terrestrial wildlife (Burton et al. 2015, Steenweg et al. 2017) including Canada lynx (Crowley et al. 2017, Thomas et al. 2019, Doran-Myers et al. 2021, Anderson et al. 2023, Kenney et al. 2024). Widespread use of increasingly more reliable camera traps has allowed monitoring at larger spatial scales. However, there are still many assumptions and questions focused on the ecological mechanisms that influence the precision and bias of this survey method, including the assessment of community dynamics (Burton et al. 2015, Steenweg et al. 2017, Blanchet et al. 2020). In addition, snowshoe hare and lynx populations cycle with an 8–11-year frequency that 4 results in years of contrasting lynx and hare densities (Keith 1963, O’Donoghue et al. 1997, Slough and Mowat 1996, Krebs et al. 2014, Krebs et al. 2017). Estimates or indices of population abundance will likely be influenced by these changing ecological conditions and need to be placed in the context of regional fluctuations in hare and lynx populations. The vast majority of lynx studies have occurred in northern boreal forests (e.g., Mowat et al. 2000, Poole et al. 1996, Slough and Mowat 1996) or on the southern periphery of their range in the northern United States and southern Canada (e.g., Apps 2000, Koehler 1990, Vashon et al. 2008a, b). The density of lynx and associated population cycles differ substantially between northern and southern populations with little known about Canada lynx occupying areas in southern boreal forests. In British Columbia, there have been no studies of lynx populations within the subboreal forest of the central interior. Canada lynx have consistently been one of the top three harvested furbearers in BC (American beaver [Castor canadensis], American marten [Martes americana], and Canada lynx) and are considered sensitive to harvest (Class 2 species; Hatler and Beal 2003). Government biologists have been asked in recent years by members of the trapper community to extend harvest seasons for lynx (M. Anderson, pers. comm). However, the status and nature of cyclic populations in many areas of BC is unknown. Increases in fur harvest during a hare low could have a disproportionate effect on lynx populations. In addition to being an important fur resource, Canada lynx may be an indicator of community dynamics in early seral and mixed-age forests. In combination with other species in the mesopredator guild, lynx could provide important information on forest change across landscapes. However, the influence of large-scale intensive timber harvest on populations cycles and lynx persistence in sub-boreal forests is unknown. This is of concern for the conservation of Canada lynx across its range, and especially 5 relevant in areas experiencing rapid and cumulative landscape change, such as central British Columbia. Canada Lynx Ecology Canada lynx are morphologically adapted for living in cold climates with deep snow (thick fur, long legs, large and well-furred feet for low foot loading) typical of boreal and subboreal forests of Alaska and Canada (Anderson and Lovallo 2003). Canada lynx are considered a prey specialist on snowshoe hare. Across lynx range, snowshoe hare can comprise 43–100% of lynx diet (Nellis et al. 1972, Brand et al. 1976, O'Donoghue et al. 1998). Other prey items include red squirrels (Tamiasciurus hudsonicus), northern flying squirrels (Glaucomys sabrinus), grouse (Bonasa spp.), small mammals, small birds, and ungulate carrion (Brand et al. 1976, Parker et al. 1983, O'Donoghue et al. 1998, Aubry et al. 1999, Mowat et al. 1999, Jung 2022). Grouse are the most frequently observed birds eaten by lynx (Staples 1995, O’Donoghue et al. 1998a, Jung 2022). Red squirrels are often the second most dominant prey item, typically serving as alternate prey and contributing more during lows in snowshoe hare abundance (Koehler 1990, Staples 1995, O’Donoghue et al. 1998b, Aubry et al. 2000, Apps 2000, Mowat et al. 2000). The dominance of snowshoe hare in lynx diet is especially evident during the winter with secondary prey becoming more common during the snow-free season (Saunders 1963, Parker et al. 1983, Mowat et al. 2000). At the southern extent of their range, lynx may exhibit a more generalist diet and use of habitat compared to more northern lynx populations (Roth et al. 2007, Murray et al. 2008). The population dynamics of lynx and snowshoe hare are closely linked (Elton and Nicholson 1942, Keith 1963, O’Donoghue et al. 1997, Slough and Mowat 1996). These two 6 species cycle with an 8–11-year period in the northern boreal forests of Alaska and Canada (high to high or low to low; Elton and Nicholson 1942, Keith 1963, O’Donoghue et al. 1997, Slough and Mowat 1996, Krebs et al. 2014, Krebs et al. 2017). The peak in the amplitude of cycling lynx and hare populations are asynchronous, with lynx demonstrating a 1–2-year lag (Elton and Nicholson 1942, Keith 1963, O’Donoghue et al. 1997, Krebs et al. 2014, Krebs et al. 2017). That cycling dynamic may differ greatly across the range of lynx. For example, there is a 4-fold difference in the high-to-low points in the cycle for populations in central Canada (Keith et al. 1977) and up to 17-fold difference in northern Canada (Slough and Mowat 1996, Poole 1994). A decrease in productivity and kitten survival (Nellis et al. 1972, Brand and Keith 1979, Parker et al. 1983, Mowat et al. 1996), and an increase in mortality, emigration, and home-range size (Slough and Mowat 1996, Ward and Krebs 1985, Poole 1997) typically characterize the low or declining population phase of the cycle. The amplitude and period of the cycle has not been well described for populations in BC. There are several proposed mechanisms to explain the cycling dynamics of lynx and hare, including climate (Yan et al. 2013), weather (Krebs et al. 2014), forest succession (Krebs et al. 2014), food availability and quality (Krebs et al. 1986, Sinclair et al. 1988, Krebs et al. 2017), and predation (Tyson et al. 2010, Krebs et al. 2014, Krebs et al. 2017). The majority of evidence suggests that predation is the most important driver of the hare-lynx cycle (Krebs et al. 2017). However, many of those factors may work synergistically to influence population fluctuations. In particular, food availability and quality for hares, in combination with predation, may strongly contribute to cyclic fluctuations (Krebs et al. 2017). In addition to limitations on food abundance, there is evidence that severe browsing by hares can also cause plants to produce secondary compounds that affect food palatability and quality (Sinclair et al. 1988, Rodgers and Sinclair 7 1997). Such changes in the quality of forage can result in reduced reproductive productivity of hares. Krebs et al. (2017) stated that more research was needed to better understand the complex effects of plant secondary compounds relative to the distribution and abundance of snowshoe hares and other herbivores. Canada lynx, a specialist predator, are generally assumed to have a type-II functional response characterized by a decreasing proportion of prey eaten as prey density increases (Tyson et al. 2010, Fryxell et al. 2014). A type-II functional response can lead to destabilization of hare populations when hares increase above carrying capacity (Fryxell et al. 2014). Hare overcompensation combined with a time lag in the numerical response of predators to hare abundance can result in increased depensatory predation (increasing proportion of hare killed with declining hare abundance; O’Donoghue et al. 1998b). The combination of functional and numerical responses can contribute to density-dependent cycles (Fryxell et al. 2014). In addition to direct mortality, lynx and other predators may also induce chronic stress in hares, resulting in decreased reproduction that further drives the population decline phase (Sheriff et al. 2009, 2010, 2011). Stress hormone levels can remain elevated for a prolonged period and be transmitted from mothers to offspring (Sheriff et al. 2009, 2010, 2011; Krebs et al. 2017). Physiological responses by hares likely have a time lag that also contributes to population destabilization and cyclic fluctuations. Lynx breed in March to early April, and male-female pairs may travel together for several days (Quinn and Parker 1987, Poole 2003). After a gestation period of 61–70 days, kittens are born in late May to early June (Saunders 1963, Poole 1994, Slough 1999, Lavoie et al. 2019). Litter sizes can range from 1–8 but more commonly consist of 2–4 kittens (Brand et al. 1976, Mowat and Slough 1998, Moen et al. 2008, Lavoie et al. 2019). Litter sizes fluctuate 8 considerably in response to snowshoe hare densities (Lavoie et al. 2019). For example, litters range from 4 or 5 kittens at population highs to single kitten litters or no reproduction during population lows (Lavoie et al. 2019). Kittens begin making movements away from the den with their mother 6–8 weeks after parturition and remain with their mother for 9–10 months traveling and hunting as a group through their first winter (Lavoie et al. 2019). Lynx typically select habitats where snowshoe hares are abundant (as summarized by Aubry et al. 2000). Throughout their range, both lynx and snowshoe hares are strongly associated with forest that is characterised by dense understory (Adams 1959, Brocke 1975, Wolff 1980, Wolfe et al. 1982, Litvaitis et al. 1985, Homyack et al. 2007). That understory may include dense shrub cover or early successional conifer growth. Snowshoe hare use such forest types for cover and food (Hodges 2000a, b). Cover from predators, precipitation, and temperature extremes may be especially important during the winter (Whittaker and Thomas 1983, Hodges 2000a, b). For this reason, optimal hare and thus lynx habitat has often been associated with older regenerating stands aged 20–35 years. The size of home ranges for lynx can vary considerably by year and area depending on the abundance of snowshoe hare. During high hare densities in northern boreal forests, the home ranges of male and female lynx typically cover 20–45 and 13–21 km2, respectively (Quinn and Parker 1987, Poole 1994, Lavoie et al. 2013). During low hare densities, home ranges for both sexes can cover hundreds of kilometres (Quinn and Parker 1987, Poole 1994, Lavoie et al. 2013). Home ranges at the southern periphery of the distribution of lynx tend to be more stable and intermediate in size relative to populations found in the boreal north (Aubry et al. 2000, Mowat et al. 2000). 9 Coyotes, bobcats (Lynx rufus), wolverines (Gulo gulo), fishers (Pekania pennanti), cougars (Felis concolor), and wolves (Canis lupus) are sympatric with lynx populations across parts of their range. Coyote and bobcat are the most common exploitive competitors of Canada lynx (Buskirk et al. 2000). Wolverine may be the dominant species in interference competition (Jung et al. 2023). Wolf, coyote, cougar, wolverine, and fisher have been observed to directly kill lynx (Poole 1994, Slough and Mowat 1996, Squires and Laurion 2000, O’Donoghue et al. 1995, 1997, McClellan et al. 2018). In Maine, predation was the leading cause of mortality for Canada lynx with at least 18 of 65 lynx moralities over a 12-year period attributed to predation (McLellan et al. 2018). Of these mortalities, 14 of 18 were caused by fisher. Research Objectives My research addressed gaps in our understanding of the population, community, and habitat ecology of Canada lynx in subboreal forests of British Columbia. Specifically, I investigated the ecological factors influencing the habitat use, behaviours, community interactions, and survey methods of Canada lynx during two contrasting periods of cyclic lynx and hare abundance and across a landscape with widespread and rapid forest harvesting. The general research objectives were: 1) Determine and contrast the habitat selection of Canada lynx and American marten (Martes americana) at two behavioural scales of movement using GPS collars and camera traps. 2) Determine if N-mixture models, camera trap occurrence rates, and behaviours can be used to monitor trends in the abundance of Canada lynx. 3) Determine the influence of sympatric and intraguild mesopredators on the distribution and habitat use of lynx. 10 My dissertation includes three interrelated chapters. In Chapter 2, I used data from collared individuals and camera traps to determine the effects of vegetation characteristics, prey density, and disturbance on habitat selection by lynx and marten at the scale of intra- and interpatch movement. The addition of American marten to this analysis allowed me to expand the research question to include a species with contrasting ecology and habitat relationships to Canada lynx and widen monitoring and management applications. The identification of habitat selection at multiple scales provides important information on the ecological processes influencing lynx distribution that is necessary for interpreting monitoring surveys and largerscale population processes. In Chapter 3, I compared multiple methods for generating abundance estimates for Canada lynx. I then used the observed behaviour of lynx at camera traps to investigate the ecological factors influencing abundance as well as the efficacy of using behaviours as a co-indicator of population trends. This chapter provides insights that allow us to interpret biases in estimates of abundance, especially in the context of cyclical dynamics of lynx and hare. In Chapter 4, I investigated the co-occurrence of lynx and sympatric mesopredators and the implications for habitat use by lynx. My results provide new insights on interspecific competition in subboreal forests and the possible implications of competition for the habitat use and population dynamics of lynx in the context of a cyclic prey base. My analyses represented two time periods with contrasting periods of hare abundance typical of the observed hare-lynx cycle. In total, my dissertation addresses key knowledge gaps on the habitat and population ecology of Canada lynx and provides new and important information on the ecological processes that influence monitoring surveys. 11 Research Methods Study Area The research was conducted in and adjacent to the John Prince Research Forest (JPRF) in northcentral BC, Canada (Figure 1). The JPRF is a 16 500-ha portion of forested provincial land 45 km northwest of the town of Fort St. James that is co-managed by the University of Northern British Columbia and Binche Whut’en, and Tl’azt’en First Nations. The study area is dominated by the Sub-Boreal Spruce biogeoclimatic zone and represents the northern extent of contiguous Rocky Mountain Douglas-fir (Pseudotsuga menziesii var. glauca) in the interior of British Columbia (Delong et al. 1993). The JPRF is the focus of a long-term monitoring program investigating the influences of climate and landscape change on a relatively large number of carnivores and ungulates. There has not been any significant trapping in the study area for almost two decades. The JPRF has experienced a wide variety of logging activities over the past 75 years and contains a mosaic of old and young forest (continuum from new harvest to old growth >250 years old) with interspersed deciduous stands. The JPRF harvested approximately 20,000 m3 on an annual basis during the study period. More intensive industrial forest harvest occurred in the study area outside the Research Forest boundaries in the 15 years before this study (2000-2015). Although salvage harvest continued, relatively fewer stands were actively harvested in between the two data collection periods (e.g. 2015–2016 to 2020–2022). The study area is within a broader region that is experiencing rapid and widespread harvest of dead and dying lodge pole pine affected by a mountain pine beetle epidemic. 12 The research forest is characterized by rolling terrain with low mountains (700 m to 1500 m above sea level) and is traversed by many small streams that flow into either Tezzeron or Pinchi Lakes. Mean daily average temperatures (1981–2010) were 3.5 ºC and ranged from a monthly mean daily average of -9.5 ºC in January to 15.4 ºC in July. Mean annual precipitation was 487.2 mm, with an average of 172.7 cm of snow (Environment and Climate Change Canada 2018). American marten, Canada lynx, short-tailed weasel (Mustela erminea), American mink (Neovison vison), river otter (Lontra canadensis), coyotes (Canis latrans), red fox (Vulpes vulpes) fisher (Pekania pennanti), and wolverine (Gulo gulo) are mesopredators that occur in the study area. American beaver (Castor canadensis), muskrat (Ondatra zibethicus), snowshoe hare (Lepus americanus), red squirrels (Tamiascurus hudsonicus), flying squirrels (Glaucomys sabrinus), ruffed grouse (Bonasa umbellus), deer mice (Peromyscus maniculatus), and voles (Myodes spp.) are some of the most common prey species throughout the study area. 13 Figure 1. Canada lynx (Lynx canadensis) study area with camera locations and hexagonal grid in John Prince Research Forest, British Columbia, Canada, 2015–2016 and 2020–2022. 14 Data Collection Table 1 summarizes the years, data types, and sample sizes used for each of the research objectives and data chapters. Camera Traps and Hair Snares I deployed and monitored 66 trail cameras across a hexagonal grid (2.5 km apart; 5.41 km2 cell size) from January–March in 2015 and 2016 and from April–October in 2016 (Figure 1). These same camera sites were set from February 2020 to May 2022 (Table 1). At each site, a rub station was established 2–3 m directly in front of a camera trap (located between 0.5 and 1 m above the snow on a tree; Figure 2). Each rub station consisted of a small diameter log (<15 cm) that was secured in the snow with one end above the ground (45 cm) and pointing directly at the camera. Snow was packed down around the log to maintain a consistent height above ground throughout the survey. The log acted as a protruding solid object that Canada lynx could sniff, scent mark, and rub their faces against. A wire gun-cleaning brush (30-caliber) was placed at the end of the log to attract and collect hair from lynx. The gun brush was attached in a vertical orientation flush against the butt end of the log with approximately one-quarter of the brush length protruding above the top edge. A local commercial lure containing beaver castor and catnip oil, as the two primary ingredients, was placed on either side of the gun brush. A small piece of hanging American beaver meat (~5 cm diameter) was hung by wire directly above the end of the log (~60 cm) to serve as an additional attractant. Cameras were checked, lure and bait added, hair collected, and brushes replaced every two weeks in the winter and every four weeks in the snow-free months. Beaver bait was not added to the sites during snow-free months due to bear activity. 15 Figure 2. Camera trap and hair snare site for Canada lynx (Lynx canadensis) and other mesopredators in John Prince Research Forest, British Columbia, Canada, 2015–2016 and 2020– 2022. GPS Collars I used GPS collars (Lotek LiteTrack 250; Lotek Engineering Inc., Newmarket, Ontario) to monitor the movements and habitat use of lynx in each of 3 years, 2020–2022. Lynx were captured in cage traps (Tomahawk 210A; 122 cm x 51 cm x 66 cm; Tomahawk Live Trap, Hazelhurst, WI, U.S.A.) from February–April. Collars weighed 250–280g and were placed on both adult male and female lynx. Marten were captured in cage traps (Havahart; 61 cm x 18 cm x18 cm; Woodstream Corporation, Lancaster, PA, U.S.A.) from January–February of 2015 and 16 2016. I equipped marten weighting >600 g with miniature GPS collars (ATS G10 ultralite GPS logger; Advance Telemetry Systems, Isanti, MN, U.S.A.). Research protocols for lynx were approved by the UNBC Animal Care and Use Committee (Protocol # 2020-3) and British Columbia Government (BC Wildlife Act, Permit PG19-596814). Research protocols for marten were approved by the UNBC Animal Care and Use Committee (Protocol # 2013-20) and British Columbia Government (BC Wildlife Act, Permit PG13-92070). Table 1. Sampling methods and sample sizes for research on the habitat ecology of Canada lynx Chapter 2 Chapter 3 Chapter 4 (Lynx canadensis) in central British Columbia, Canada, 2015–2016 and 2020–2021. Camera traps (n = 66): 2015–2016 X X X Camera traps (n = 66): 2020–2022 X X X GPS collars (n = 17): Lynx 2020–2021 X X GPS collars (n = 9): Marten 2015–2016 X Sampling method Habitat Covariates The study area had a forest inventory derived from high-density light detection and ranging (LiDAR; 8–10 pulses/m2) data obtained in August and September 2015. Independent covariates were represented by three broad categories that included forest cover and structure, disturbance, 17 and topography. Variables representing forest cover and structure from LiDAR data included canopy closure at 3 vertical layers calculated at a 50m radius from a camera or GPS location (bottom [0–3m], mid [3–10m], and top [>10m]) and cover calculated at the stand polygon scale (ground [0–1m], low [1–3m], mid [3–10m], and top [>10m]). The LiDAR data were collected during summer when deciduous vegetation was in leaf. Thus, I used empirical data and values from the literature to adjust the LiDAR data for canopy conditions typical of the leaf-off season (Davison et al., 2020, Wasser et al., 2013). I measured canopy cover in 4 cardinal directions at 3 m from each camera location and >3 m above ground and averaged those values during the leaf-on and leaf-off seasons (Canopeo Application; www.canopeo.com; Alamo Software Foundation). I applied a correction factor of -25% and 52% to the leaf-off season for sites with few (26–50%) and a large (51–100%) proportion of deciduous trees, respectively. I used provincial forest inventory data (Parminter 2000) to represent a number of ecological factors that were likely of relevance to the distribution of lynx, hare, and mesopredators. That included distance of each camera site to riparian areas, including lakes, wetlands and streams; the proportion of area (250m radius adjacent to each camera) containing recent cutblocks (<15 years post harvest), density of edge between forest and recent forest openings (<15 years post disturbance), elevation, and percent slope. I used camera occurrences to measure the relative abundance of the typical prey of lynx (red squirrel, snowshoe hare, grouse). Cameras have been compared to live trapping methods and used to estimate population densities of red squirrels, red-backed voles, deer mice, and snowshoe hares (Villette et al. 2016, Villette et al. 2017, Kenney et al. 2024). I used pellet transects 18 monitored from 2017 to 2022 as a secondary measure of the density of snowshoe hares (Chisholm 2023, Krebs et al. 2023). 19 Chapter 2: Linking ecological processes of individual-based data and occurrence surveys: Canada lynx (Lynx canadensis) and American marten (Martes americana) movement and habitat selection using GPS-collars and camera traps Abstract There has been a rapid increase in the use of camera traps to measure population-level patterns of occurrence, distribution, and abundance of terrestrial wildlife. Individual patterns of movement and behaviour may influence camera trap surveys. However, there has been little study of the relationship between animal behaviour and occurrence at camera traps. Different scales of behaviour, as represented by movement, by collared animals (slow vs. fast) can aid in the interpretation of data collected during camera trap surveys. Habitat associations derived from camera trap surveys may reflect most habitat used by an animal or only a small portion depending on the influence of movement scale and associated behaviour. I used GPS-collar locations and occurrence data at camera traps to compare habitat selection by Canada lynx (Lynx canadensis) and American marten (Martes americana) at two movement scales (slow vs. fast) during two periods of contrasting prey abundance. I found that camera traps, in general, reflected habitat use measured with GPS-collars for both species. Mid-level and top-level vegetation cover derived from LiDAR data were important predictors of habitat use for both marten and lynx, but with opposite directional influences. For lynx, the direction and significance of habitat covariates were nearly identical for camera traps and slow and fast movements, but with GPS-collar models also being negatively associated with ground-strata (0–1m) cover. For marten, camera trap locations were differentiated from GPS-collar locations (fast and slow) by being positively 20 associated with closer distances to riparian edge. Differential use of habitat defined by forest age and structure by lynx and marten suggest that each species would serve as a unique indicator of forest condition and change. Although I found that camera traps and GPS collars provided similar assessments of habitat use for lynx and marten, it is unclear if this is the case for other wildlife species. Estimates of distribution, abundance, and habitat use derived from camera-trap surveys may be misinterpreted without knowledge of behavioural influences that likely vary by species, time period, and geographic area. Introduction During the last two decades there has been an increase in the use of camera traps to measure population-level patterns of occurrence, distribution, and abundance of terrestrial wildlife (Burton et al. 2015, Steenweg et al. 2017). Habitat use often is derived from these surveys as a core objective or as an integral component of population estimates. However, there is a considerable gap in our understanding of the relationship between species occurrence at camera traps and underlying ecological processes (Burton et al. 2015). For example, density estimates from camera trap surveys are often dependent on species’ movement rates and home range characteristics that are not well understood (Kjellander et al. 2004, Burton et al. 2015). Individual patterns of movement (i.e., movement rate and path) and habitat use are two mechanisms that explain population-level processes (i.e., abundance, distribution, occurrence) on a landscape (Wiens et al. 1993). The movement rate and path provide insights on the decisions animals make in moving from one location to another and the choice of patches determines the responses of animals to variation in habitat availability (Wiens et al. 1993). Thus, environmental 21 heterogeneity influences both the movement and habitat choice of individual animals, and that may strongly influence estimates derived from population-level surveys (Popescu et al. 2014, Neilson et al. 2018, Stewart et al. 2018, Chandler et al. 2022). For this reason, the pairing of GPS-collars and camera traps could provide valuable insights into the interpretation of point surveys. Most studies using camera traps assume that site detections fully represent animal space use (Burton et al. 2015, Neilson et al. 2018, Stewart et al. 2018). A few studies have investigated the influence of space use on estimates of occupancy or abundance by simultaneously collecting species occurrence and animal movement data (e.g., Sollman et al. 2013, Popescu et al. 2014). For fishers (Pekania pennanti), Popescu et al. (2014) found that telemetry and camera trap data provided consistent information on space use. Stewart et al. (2018) studied a different population of fishers and found that the magnitude of animal movements better reflected occurrence than the proximate space use at camera trap locations. The relationships between animal movement, habitat use, and camera trap locations are unknown for many species. An understanding of habitat is an important component of conservation and management plans for wildlife, yet it is unclear what types of habitats are represented by camera data. Camera trap surveys may reflect most habitat used by an animal or only a small portion. In addition, different behaviours (i.e., foraging, resting, travel, etc.) may influence habitat associations. For example, animals may use different resources or habitat features when hunting as compared to those resources used when moving to patches of habitat or different portions of a seasonal range (Nams and Bourgeois 2004). Thus, camera trap locations may represent a foraging patch or a travel corridor connecting foraging patches. Information may be lost if animal locations are grouped into one behavioural category since variation in the 22 movement patterns and use of different habitats define interpretations of resource selection (Johnson et al. 2002, Nams and Bourgeois 2004). A better understanding of the ecological processes influencing camera trap surveys is needed if we are to have confidence that cameraderived habitat associations are effective for conservation and management decision making. Canada lynx (Lynx canadensis) and American marten (Martes americana) are sympatric at the landscape scale but often have contrasting habitat requirements at the scale of the habitat patch. Marten are positively associated with late successional forests or the structural attributes found in old forests (Buskirk and Powell 1994, Powell et al. 2003, Thompson et al. 2012), and lynx are associated with forests exhibiting early successional characteristics that support snowshoe hares (Lepus americanus; Mowat et al. 2000, Anderson and Lovallo 2003, Poole 2003). Selection for cover by lynx may be related to hare availability, but areas with extensive forest cover may also provide thermal refugia during the summer (Vashon et al. 2008) and protection from sympatric carnivores (McLellan et al. 2018). Horizontal cover can be an important constituent element of den sites selected by lynx (Organ et al. 2008, Squires et al. 2008). The consistent but contrasting patterns of habitat associations between lynx and marten are useful characteristics of indicator species (Lambeck 1997, McLaren et al. 1998, Noss 1999, Carignan and Villard 2000), that may also lend well to studies investigating ecological processes and surveys. The contrasting ecologies of lynx and marten can provide insights into the effectiveness of camera traps for monitoring habitat use that expand monitoring and management applications. I used GPS-collar data (Global Positioning Systems) and camera trap surveys to investigate behavioural and interspecific differences in habitat selection of sympatric populations of Canada lynx and American marten. GPS collars can provide the fine-scale data necessary for 23 investigating behavioural indicators, including movement and habitat selection. To better interpret resource selection, it helps to not only know what habitat animals use, but to also understand how and why they are using these habitats. Different scales of movement by collared animals (slow vs. fast) can be indicators of behaviours (i.e., foraging or resting vs. travel; Sibly et al. 1990, Johnson et al. 2002a, b) and aid in the interpretation of data collected during point surveys. For example, if camera locations represent a single movement scale (i.e., slow movements) and associated habitat, survey results may not be representative of all habitat types used by a species. Typically, location or “use” data are gathered with GPS or VHF collars. However, similar data can be gathered with camera traps. To-date, there has been no comparison of model outputs and resulting ecological inference generated with both collar and camera data collected for marten or lynx. I compared habitat selection at two different movement scales to camera data collected in the same area and time period. To better understand the consistency in patterns of habitat use temporally, I also compared these three measures (e.g., camera trap, slowmovement GPS collar, and fast-movement GPS collar) to camera trap data collected outside of this window during a contrasting period of prey abundance. I predicted that lynx and marten would have two scales of movement: foraging patch (slow; intrapatch) and corridor movements between foraging patches (fast; interpatch). For lynx, I predicted that slow, hunting-type movements would occur in snowshoe hare habitat. These are typically early successional forests with canopy heights ranging from 3–10m (Mowat et al. 2000, Anderson and Lovallo 2003, Poole 2003). For marten, I predicted that slow movements would occur in closed-canopy mature forest (>10 m canopy height). Marten are known to select such habitats as they provide prey and vertical and horizontal cover (e.g., coarse woody debris) from predators (Buskirk and Powell 1994, Powell et al. 2003, Thompson 24 et al. 2012). I predicted that habitat selection using intrapatch movement data (more frequent, slower rate of movement) collected from collared animals would be most similar to data collected at camera-trap locations. Materials and Methods Study Area The research was conducted in and adjacent to the John Prince Research Forest (JPRF) in northcentral BC, Canada, which is co-managed by the University of Northern British Columbia, Binche Whut’en, and Tl’azt’en First Nations. The study area is ~390 km2 and characterized by rolling terrain with low mountains (700 m to 1500 m above sea level). The region represents the northern extent of contiguous Douglas-fir (Pseudotsuga menziesii var. glauca) forests in the interior of British Columbia and is dominated by the Sub-Boreal Spruce biogeoclimatic zone (Delong et al. 1993). The area has experienced a wide variety of logging activities over the past 75 years and contains a mosaic of old and young forest (continuum from new harvest to old growth >250 years old) with interspersed deciduous stands. The study area had relatively little forest harvesting during the time of data collection and has not had any significant trapping for almost two decades. The study area is part of a long-term monitoring program investigating the influences of climate and landscape change focused on multi-species detections across the JPRF as well as an adjacent area managed by a major forest company. 25 Field Data Collection GPS-collared Individuals I used GPS collars (Lotek LiteTrack 250; Lotek Engineering Inc., Newmarket, Ontario) to monitor the movements and habitat use of lynx in each of 3 years, 2020–2022. Lynx were captured in cage traps (Tomahawk 210A; 122 cm x 51 cm x 66 cm; Tomahawk Live Trap, Hazelhurst, WI, U.S.A.) from February–April. Collars weighed 250–280g and were placed on both adult male and female lynx. Captured lynx were immobilized with a syringe pole using a ketamine (5 mg/kg)/medetomidine (0.05 mg/kg) combination as an immobilizing agent. Each lynx was equipped with a uniquely numbered (between animals) and colored ear tag in each ear. Collars were placed on lynx weighing >7.5kg and programmed to transmit 6 locations per day for the last 10 days of a month and 2 locations per day for the remainder of the month. Collars automatically released from the lynx one year after the capture date. Research protocols for lynx were approved by the UNBC Animal Care and Use Committee (Protocol # 2020-3) and British Columbia Government (BC Wildlife Act, Permit PG19-596814). Marten were captured in cage traps (Havahart; 61 cm x 18 cm x18 cm; Woodstream Corporation, Lancaster, PA, U.S.A.) from January–February of 2015 and 2016. I guided captured marten into a handling cone and immobilized them with isoflurane administered through a portable diffuser (DesMarcheliers et al. 2007). I equipped marten weighting >600 g with miniature GPS collars (ATS G10 ultralite GPS logger; Advance Telemetry Systems, Isanti, MN, U.S.A.). Collars were programmed to record a location every five minutes and marten were recaptured during the same winter to retrieve data (6–8 weeks). All successful GPS fixes were calculated with four or more satellites (3D fixes). A passive integrated transponder tag (PIT) was 26 injected subcutaneously between the shoulder blades for individual identification. Research protocols for marten were approved by the UNBC Animal Care and Use Committee (Protocol # 2013-20) and British Columbia Government (BC Wildlife Act, Permit PG13-92070). For both species, I checked traps once or twice daily, depending on weather conditions and location. Cage trapping was suspended if conditions were wet or temperatures were < -20˚ C. Cage traps were baited with beaver meat (Castor canadensis) and commercial lures. A hanging grouse feather/wing was added to lynx traps. I placed conifer boughs and corrugated plastic over the trap to provide protection from precipitation. Hair and tissue samples were collected from anesthetized animals. Standard morphological measurements were taken (i.e., weight, body length, chest girth, tail length, shoulder length, zygomatic arch). I assessed age by weight and an examination of tooth wear and coloration. Camera Traps I used data collected from camera traps during two contrasting periods (2015–2016 and 2020– 2022) of hare abundance (Chisholm 2023). Occurrence rates (# occurrences/# camera days) of snowshoe hares at camera traps decreased 73% between the winter of 2015–2016 (i.e., high hare abundance) and 2020–2022 (i.e., low hare abundance). This trend was supported by a 40% decrease in hare densities measured at pellet plots established 3 years after the estimated hare peak (2018–2021; John Prince Research Forest, unpublished data). I deployed 66 camera traps (Bushnell Trophy Trail Cameras models 119467 and 11947; Bushnell Outdoor Products, Missouri, USA) on a hexagonal grid (2.5 km apart; 5.41 km2 cell size) from January–March in 2015 (23 Jan–03 Apr) and 2016 (01 Feb–10 Apr). In 2020–2022, trail cameras (Browning Dark Ops HD Pro Trail Cameras model BTC-6HDP; Browning, Utah, USA) were set at the same sites as 2015–2016. Camera data used from 2020–2022 included: 01 February–11 April and 24 June– 27 14 October. Camera models used during the two time periods had similar trigger speeds (0.2 seconds). I also used a consistent measured distance between camera traps and scent posts to standardize detection distance and the field of view (see paragraph below). Camera traps were randomly placed at or near the center of each hexagonal cell. At each site, a scent post was established 2.5–3 m directly in front of a remote camera between 0.5 and 1 m above the ground on a tree. Each scent post consisted of a small diameter log (<15 cm) secured with one end above the ground (45 cm) and pointing directly at the camera. A local commercial lure containing beaver castor and catnip oil was placed at the end of the log. A small piece of hanging beaver meat (~5 cm diameter) was hung by wire directly above the end of the log (~60 cm) to serve as an additional attractant. Bait was consumed quickly by most carnivores (~2–3 days), but the remnant scent continued to serve as an additional lure to encourage animals in the vicinity of the camera trap to move into view. Cameras were checked and lure and bait added every two weeks in the winter and every four weeks in the snow-free months. Only scent lure was added to sites during snow-free months due to bear activity. In 2015–2016, cameras were set to take 30s of video with a 1s delay between video-recordings. In 2020–2022, cameras were set to take 10s of video with a 1s delay between video-recordings. These schedules allowed for nearly continuous recording of the time an animal was in view. Habitat Covariates The study area had a forest inventory derived from high-density light detection and ranging (LiDAR; 8–10 pulses/m2) data obtained in August and September 2015. Independent covariates were represented by three broad ecological and environmental categories that included forest cover and structure, disturbance, and topography (Table 2). Variables representing forest cover 28 and structure were derived from LiDAR data and included canopy closure at 3 vertical layers calculated at a 50m radius from a camera or GPS location (bottom [0–3m], mid [3–10m], and top [>10m]) and cover calculated at the stand polygon scale (ground [0–1m], low [1–3m], mid [3– 10m], and top [>10m]). I used GIS data to measure the distance of each camera site to riparian areas, the proportion of area (250m radius) containing recent cutblocks (<15 years in age), edge density, elevation, and slope. Table 2. Variables used in the development of habitat selection models for Canada lynx (Lynx canadensis) and American marten (Martes americana) using camera traps and GPS-collared individuals in central British Columbia, Canada, 2015–2016 and 2020–2022. Parameter cover (0–3) cover (3–10) cover (10+) Stand cover (0–1) Stand cover (1–3) Stand cover (3–10) Stand cover (10+) elevation slope dist.riparian dist.edge prop. forest age (<20 yrs) edge density Description Average canopy cover 0–3 m (LiDAR, 50-m radius) Average canopy cover 3–10 m (LiDAR, 50-m radius) Average canopy cover >10m (LiDAR, 50-m radius) Average canopy cover (LiDAR; 0–1 m) stand polygon scale Average canopy cover (LiDAR; 1–3 m) stand polygon scale Average canopy cover (LiDAR; 3–10 m) stand polygon scale Average canopy cover (LiDAR; 10+ m) at the stand polygon scale Digital elevation model (LiDAR; m) Digital elevation model (LiDAR; percent) Distance to stream and lake edge (m) Distance to forest stand edge (m) Proportion of area (250-m radius) with recent cutblocks (<20 yrs) Edge density (250-m radius) Variable type Continuous Continuous Continuous Continuous Continuous Continuous Continuous Continuous Continuous Continuous Continuous Continuous Continuous 29 Data Analysis Movement Scales I used a non-linear curve fitting procedure to determine if observed movement patterns represented two scales (i.e., slow vs. fast; Sibly et al. 1990, Johnson et al. 2002a, b). I first calculated the movement rate (distance/time) between successive GPS-collar locations using a 4hr interval for both lynx and marten. For lynx, this represented a 10-day period each month. A two-process non-linear curve was then fit to the frequency distribution of movement rates for each collared animal by season and species to identify movement scales (i.e., large-scale vs. small-scale processes). Specifically, I used a piece-wise “hockey-stick” regression to determine a break point in movement rates for individuals of each species (Bacon and Watts 1971). This model assumes the process can be fit by two straight lines, with different slopes, and calculates the two slopes and movement rate value (breakpoint) at which the slope changes. I grouped all individual-based movement scales (fast vs. slow) for use in further analyses (Figure 3 and 4). 30 Figure 3. Map of study area illustrating camera locations as well as GPS-collar locations representing fast and slow movements by Canada lynx (Lynx canadensis) during the winter period in central British Columbia, Canada, 2015–2016 and 2020–2022. 31 Figure 4. Map of study area illustrating camera locations as well as GPS-collar locations representing fast and slow movements by American marten (Martes americana) during the winter period in central British Columbia, Canada, 2015–2016 and 2020–2022. 32 Habitat Selection I used multinomial logistic regression to investigate habitat characteristics that influenced the occurrence of lynx and marten. Occupancy modelling was considered but determined not necessary given our target species (common with high detection rates), survey effort and timing (continuous monitoring during period of interest), camera spacing (< 2.5km between sites), use of bait and lure that were designed to provide a high likelihood of detection, and focus on occurrence throughout the entire survey duration (Mackenzie and Royle 2005, Tigner et al. 2015). Furthermore, home ranges of lynx and marten were large enough to encompass multiple camera stations violating the assumption of spatial independence for occupancy models (Burton et al. 2015, MacKenzie et al. 2004, Parsons et al. 2019). Multinomial regression allowed me to investigate differences in resource selection between camera and collar data sets using the same set of random locations. For the dependent variable in the camera trap portion of the multinomial models, I first summed all daily occurrences (interval = 24 hour) at a site during each season and biological period: winter low hare abundance (2020–2022), winter high hare abundance (2015–2016), snow-free low hare abundance (2020–2021), and snow-free high hare abundance (2016). I then calculated the occurrence rate (#occurrence days/#operational camera days) for lynx and marten at each site. I classified the frequency of lynx or marten into two categories (moderate/high (1) vs no/low use (0)) based on the 50th percentile of the occurrence rate at a site. The binary dependent variable for occurrence rate allowed for consistent analyses between years (i.e., much greater number of lynx and marten occurrences in 2015–2016), and an accounting of variation in sampling effort between seasons and sites. The response variable served as a coarse measure of relative abundance (no/low use vs moderate/high use) rather than 33 presence or absence. For lynx in the winter low hare season, a “0” represented a occurrence rate of < 1.4 lynx occurrences/site/day. For snow-free low hare, a “0” represented 0.6 lynx occurrences/day. Lastly, for lynx winter high hare and snow-free high hare, a “0” equated to < 2.9 and < 1.2 occurrences/site/day, respectively. For marten in the winter low hare and high hare years, a “0” represented an occurrence rate of < 1.06 and < 2.17 marten occurrences/site/day, respectively. There were 5 possible outcomes in each multinomial logistic model that represented the occurrence of lynx or marten: GPS fast or slow movements, 2020–2022 camera data, and 2015– 2016 camera data. All data sets were compared to a fifth set of random locations selected from across the camera grid study area at a minimum 1:1 ratio for each multinomial data set. Models for understanding resource selection with cameras included camera trap sites with moderate/high use by lynx or marten in 2020–2022 (Outcome 1) and camera trap sites with moderate/high use by lynx or marten in 2015–2016 (Outcome 2). Models for understanding resource selection using GPS collars were stratified into two scales of behaviour that represented slow movement GPScollar locations (Outcome 3), and fast movement GPS-collar locations (Outcome 4; Figure 3 and 4). Models for lynx were fit for 2 seasons (winter and snow-free), while models for marten were fit for winter only, the only season of monitoring with GPS collars. I used an Information Theoretic Model Comparison (ITMC) approach to develop a set of 10 multinomial regression models that contrasted resource selection as quantified with camera traps and GPS-collars for each species and season (i.e., lynx winter, lynx snow-free, marten winter; Burnham and Anderson 2004; Table 3). I used Akaike’s information criterion for small sample sizes (AICc) to identify the most parsimonious model explaining habitat association and 34 differentiation between camera occurrence and GPS-collar data sets (Burnham and Anderson 2004). I used both ΔAICc and Akaike weights (AICcw) to rank and compare models. Table 3. A priori candidate models (multinomial logistic regression) representing habitat use of Canada lynx (Lynx canadensis) and American marten (Martes americana) using camera traps and GPS-collared individuals in central British Columbia, Canada, 2015–2016 and 2020–2022. Model Name Canopy Cover (50-m buffer) Topography Disturbance Stand Canopy Cover Riparian + Cover Disturbance + Topography 1 Disturbance + Topography 2 Topography + Cover Disturbance + Cover Null Model cover (0–3) + cover (3–10) + cover (10+) elevation + slope + dist. riparian prop. forest age (<20 yrs) + edge density cover (0–1) + cover (1–3) + cover (3–10) + cover (10+) dist. riparian + cover (3–10 m) + cover (10+ m) prop. forest age (<20 yrs) + edge density + elevation + slope prop. forest age (<20 yrs) + dist.riparian + elevation elev + slope + dist.riparian + cover (0 –3 m) + cover (3–10 m) + cover (10+ m) edge density + cover (3–10 m) + cover (10+ m) no independent covariates K 4 4 3 5 4 5 4 7 4 1 I used the receiver operating characteristics and resulting area under the curve (AUC) to assess the predictive ability of the best model (Pearce and Ferrier 2000). I used a one-fold crossvalidation routine to withhold each record sequentially from the model building process and then calculated the independent probability of that withheld record being a species location. I considered a model with an AUC score of 0.7 to 0.9 to be a useful application and a model with a 35 score >0.9 as highly accurate (Boyce et al. 2002). I used the AUC scores to compare the relative predictive ability of the 4 outcomes for each species’ model set. I used 95% confidence intervals to assess the strength of effect of each predictor covariate on the dependent variable. Poor power and inconclusive statistical inference are expected from covariates with confidence intervals that approach or overlap 0. I used tolerance scores to assess variables within each model for excessive collinearity (Menard 2001). All data analyses were performed using Stata (version 17.0; Statacorp, College Station, Texas). Results Marten Captures I captured and monitored a total of 9 marten (5 male, 4 female) with GPS collars in 2015 (3 marten) and 2016 (6 marten). I obtained only 157 locations over 31 days for one collared female. The 5-minute fix success rate for the remaining 8 collars (<10m DOP) was 13.0%. Collars successfully recorded between 748 and 2996 (‫ = ̅ݔ‬1680.8, SE = 278.7) locations over periods of 35 to 52 days (‫ = ̅ݔ‬46.0, SE = 2.3). This fix schedule corresponded to an average of 36.3 (SE = 5.38) locations per day (Range = 16.6–58.9). Location data were standardised to an interval of 3– 4 hours (446 marten locations) to ensure consistency with the collar schedule used for GPS collars deployed on lynx. A total of 446 random locations were used in this analysis. Lynx captures In total, I captured and collared 17 Canada lynx (11 male, 6 female) from 2020–2022. I captured 7, 4, and 6 lynx in 2020, 2021, and 2022, respectively. Overall fix success rate (<10m DOP) was 70.0%. Collars successfully recorded between 140 and 1338 (‫ = ̅ݔ‬827.3, SE = 82.4) locations 36 over periods of 32 to 382 days (‫ = ̅ݔ‬262.7, SE = 26.8). After filtering the data set for 4-hour fixes and locations within the LiDAR area, I used a total of 5,335 lynx locations and 5,335 random locations (winter = 3,193, snow-free = 2,142) for the habitat analyses. Camera Traps In 2015–2016, cameras functioned properly an average of 96.0% (SE = 0.9; 8,866 camera-days) and 90.3% (SE = 2.4; 5,008 camera-days) of potential camera days in the winter and snow-free periods, respectively. In 2020–2022, cameras functioned properly an average of 95.1% of potential camera days in the winter (SE = 0.8; 13,181 camera-days) and 91.1% (SE = 1.4; 10,101 camera-days) of potential camera days in the snow-free periods. There was a 76.2% decrease in lynx occurrence rates at camera traps between 2015–2016 (8.26 occurrences/day) and 2020– 2021 (1.97 occurrences/day) during the winter, and a 65.9% decrease (3.17 to 1.08 occurrences/day) in the snow-free season. There was a 39.4% decrease in marten occurrence rates between 2015–2016 (5.81 occurrences/day) and 2020–2021 (3.52 occurrences/day) during the winter. Movement Scales For both lynx and marten, the two-process non-linear model fit the loge frequency distribution of movement rates (P < 0·001) for most individuals (lynx winter = 12 of 17; lynx snow-free = 12 of 15; marten = 6 of 9). Data from individuals that fit the two-process non-linear model were used in the subsequent habitat analyses. For lynx in the winter and snow-free period, the break point between slow and fast movements was 7.42 m/min (11.9% fast) and 6.58 m/min (14.4% fast), respectively. For marten in winter, the break point was 6.9 m/min (18.6% fast). 37 Lynx Winter Habitat Models Canopy cover at the stand scale was the top-ranked model explaining habitat selection by lynx (AICcw = 1.0); Table 4). Lynx were positively associated with low-strata (1–3m) and mid-strata vegetation cover (3–10m) during winter, but negatively associated with top-strata cover (10m +) (Figure 5). The direction and significance of covariates were identical for both camera trap periods, and nearly identical for both movement scales. GPS-collar models were differentiated from camera traps by also being negatively associated with ground-strata (0–1m) cover. All models had useful predictive accuracy (AUC > or overlapping 0.7). Lynx Snow-free Habitat Models Similar to winter, the stand-level cover model was best at representing the resource selection of lynx (Table 4; AICcw = 1.00). Lynx selected for sites with more mid-strata vegetation cover and less cover >10 meters for both years of camera occurrence data and GPS-collar locations measured at both movement scales (Figure 5). Although lynx were positively associated with low-strata vegetation (1–3m) for all models, this covariate was not significant for the 2015–2016 camera data set. GPS-collar locations (fast and slow) were differentiated from camera trap locations by being negatively associated with ground-strata (0–1m) cover. Only the 2020–2022 camera model had a useful predictive accuracy (AUC = 0.69, SE = 0.042). Marten Winter Habitat Models The regression model with topography and cover covariates provided the most parsimonious representation of resource selection by marten during winter (Table 4; AICw = 0.99). Marten monitored with GPS collars and cameras were positively associated with greater amounts of 38 forest cover above 10 meters (Figure 6). At camera traps, marten selected for sites closer to riparian edge. Although not significant, slow and fast movements were associated with further and closer distances to riparian features, respectively. Marten selected for lower elevation portions of the study area, but this covariate was only significant when included in the GPS collar models for both scales of movement. All model outcomes had useful predictive accuracy (AUC > 0.7). Table 4. AICc scores, and AICc weights (w) for the three highest-ranked multinomial logistic regression models representing habitat use of Canada lynx (Lynx canadensis) and American marten (Martes americana) using GPS collars and camera traps in central British Columbia, Canada, 2015–2016 and 2020–2021. Area under the curve (AUC) and standard error (SE) for the receiver operating characteristic represents the predictive accuracy of each model. Model LYNX WINTER Cover Stand Scale Disturbance + Cover Topography + Cover LYNX SNOW-FREE Cover Stand Scale Topography + Cover Riparian + Cover MARTEN WINTER Topography + Cover Disturbance + Topo. 1 Disturbance + Topo. 2 K AICc ΔAICc w AUC1(SE) AUC2(SE) AUC3(SE) AUC4(SE) 5 4 7 8489.4 8741.5 8756.5 0.0 252.1 267.1 1.00 0.00 0.00 0.72 (0.03) 0.74 (0.01) 0.68 (0.02) 0.70 (0.04) 5 7 4 8248.4 8265.8 8324.9 0.0 17.5 76.5 1.00 0.00 0.00 0.69 (0.04) 0.67 (0.01) 0.64 (0.02) 0.62 (0.04) 7 6 4 1789.3 1803.7 1807.8 0.0 14.4 18.5 1.00 0.00 0.00 0.70 (0.04) 0.75 (0.02) 0.77 (0.03) 0.73(0.04) 39 Figure 5. Significant coefficients for top-ranked models illustrating habitat use by Canada lynx (Lynx canadensis) during the winter and snow-free periods using GPS collars and camera traps in central British Columbia, Canada, 2015–2016 and 2020–2022. Blue = Camera (2020–2022), Red = Camera (2015–2016), Green = GPS slow movement, Orange = GPS fast movement. 40 Figure 6. Significant coefficients for top-ranked models illustrating habitat use by American marten (Martes americana) using GPS collars and camera traps during the winter in central British Columbia, Canada, 2015–2016 and 2020–2022. Blue = Camera data (2020–2022), Red = Camera data (2015–2016), Green = GPS slow movement, Orange = GPS fast movement. 41 Discussion This is the first study to investigate ecological processes influencing camera trap surveys of sympatric Canada lynx and marten. I found that camera traps, in general, provided similar inferences about habitat selection when compared to GPS-collar data. This relationship held for two species with different ecological niches and contrasting habitat needs as well as between survey periods with differences in the abundance of snowshoe hare. My data suggest that camera traps can be a reliable method for measuring habitat relationships of lynx and marten. I found minor differences in habitat selection between the two scales of movement. Fast movements by GPS-collared marten were associated with steeper slopes, more mid-level vegetation cover, and adjacency to riparian features. Although these covariates were nonsignificant, the relationships suggested that marten moved faster in riparian habitats or older regenerating stands. Marten may be using these habitats for inter-patch travel between foraging or resting habitat. Habitat selection by lynx was consistent for both slow- and fast-scale movements. Canada lynx are habitat specialists and may spend the majority of their time foraging and traveling in similar habitats at the 4-hr movement intervals used in this study. The location interval for GPS collars on lynx limited my analyses to only two movement scales. Data representing shorter interval movements could reveal finer scales of movement and differences in habitat use at additional spatiotemporal scales (Nams and Bourgeois 2004). The influence of habitat covariates was similar between time periods with contrasting prey abundance. In addition to a decrease in hare, lynx, and marten occurrence, there was an increase in red squirrel, fisher, and wolverine from 2015–2016 to 2020–2022 (See Chapter 4.). I predicted that GPS-collar locations would best match camera-trap data that were collected concurrently, when ecological conditions across the study area were the same. My results 42 generally supported that prediction, but I also found similar habitat selection using camera-trap data collected outside my GPS-collar periods. Although the abundance of lynx and marten, their prey, and sympatric carnivores changed between monitoring periods, vegetation cover remained a consistent and important predictor of the occurrence of these two habitat specialists. Mid-level and top-level vegetation cover were important predictors of habitat use for both marten and lynx, but with some opposite directional influences. For example, lynx selected for less top canopy cover, while the inverse relationship was found for marten. For lynx, the topranked model included cover covariates measured at the stand polygon scale, while the top marten model had cover covariates measured at the area surrounding the camera (i.e., 50-m radius). Although measured at different spatial scales, cover covariates were often significant and clearly an important component of the habitat of lynx and marten. For marten, the selection for habitat closer to riparian features was the covariate that differed most between the two methods. Distance to riparian edge significantly influenced the occurrence of marten at camera locations during both time periods (2015–2016 and 2020–2022) but not at GPS-collar locations. Riparian edge is a relatively narrow and small proportion of the total land area, and marten may be using riparian corridors frequently to travel between foraging habitats. Although marten may spend a relatively small proportion of their time in riparian areas, they were captured on camera consistently when moving in these corridors. My habitat selection results for both marten and lynx were consistent with other habitat studies in North America. Both species are generally considered habitat specialists, but with contrasting habitat requirements. Although American marten can persist in habitats such as regenerating or deciduous forests (Poole et al. 1994, Payer and Harrison 2003), they are generally associated with mature spruce/fir forests containing sufficient canopy cover and 43 structure (Buskirk and Powell 1994, Chapin et al 1998, Hargis et al 1999). Large open areas are often avoided by marten and may limit dispersal (Buskirk and Powell 1994, Moriarty et al 2015). Habitat fragmentation and loss of interior forests may result in reduced abundance or even local extirpation of marten populations (Hargis et al 1999, Moriarty et al 2011). Consistent with these studies, I found that canopy cover above 10m was a key predictor of habitat selection by marten. In contrast, Canada lynx are generally found in boreal, sub-boreal and montane forests with finer scale habitat selection matching the distribution of snowshoe hare (Mowat et al. 2000, Poole 2003, Thomas et al. 2019). At the stand scale, lynx often select for older regenerating stands (>20 years old) with dense understory that contains horizontal and vertical cover, while selecting against younger regenerating stands (Mowat et al. 2000). Canada lynx in my study also selected for stands with greater canopy cover (1–10m) typically found in older regenerating forests. Lynx and marten both display consistent and identifiable patterns of habitat association, a key characteristic of indicator species. Indicator species are used to measure the overall status and condition of ecosystems often in relation to human disturbance (Caro 2010). The indicator species concept is attractive because it allows sampling of the occurrence or abundance of a small set of species rather than the entire community (Caro 2010, De Caceres et al. 2010). The sensitivity of marten and lynx to forest age and structure (i.e., cover) as well as variation in the abundance of prey suggests that both species are good indicators of forest condition and change. Maintaining sufficient habitat for these two species on the same landscape would require a mosaic of stands with varying cover characteristics likely beneficial to many other wildlife species. However, more research is required to confirm the extent (i.e., number of species or species guilds) and strength of that relationship relative to varying forest conditions. 44 Many ecological patterns and processes have their mechanistic roots in individual behaviours of movement and habitat use (Wiens et al. 1993). Historically, many assessments of habitat use by wildlife were based on location data collected with radio transmitters or GPS collars. Although this technique can provide accurate individual-based location data that represent movement and habitat use, these studies are expensive, labor intensive, and expose animals to the risk of capture and immobilisation. Given those costs, studies of mesopredators often have small sample sizes of collared animals limiting the extrapolation of results across larger landscapes. In the last two decades, new technologies focused on DNA and camera sampling have offered alternatives for researching and monitoring the distribution of wildlife populations across larger areas. However, we still have little understanding of the ecological processes influencing these surveys and how they may affect the assumptions and biases incorporated into survey design and analyses. Although I found that camera traps and GPS collars provided similar assessments of habitat use for two sympatric species that are relatively common across much of North America’s boreal and subboreal forests, I recommend more paired comparisons of GPS-telemetry and non-invasive survey methods. Estimates of distribution, abundance, and habitat use derived from camera-trap surveys may be misinterpreted without knowledge of behavioural influences that likely vary by species, time period, and geographic area (Burton et al. 2015). 45 Chapter 3: Behaviour as an indicator of cyclic trends in abundance of Canada lynx (Lynx canadensis) and snowshoe hare (Lepus americanus) Abstract The behaviour of individual animals influences reproduction and survival. Thus, variation in animal behaviour can result in changes in the distribution and abundance of populations as well as broader community dynamics. The pairing of behavioural cues with abundance indices can provide additional insights into the ecological processes influencing population and community trends. I used a combination of occurrence and behavioural data from camera traps to measure variation in the abundance of Canada lynx populations during two time periods with contrasting abundance of their primary prey, snowshoe hare. My objective was to determine if N-mixture models, camera occurrence rates, and behavioural cues could be used to monitor trends in cyclic abundance. Behaviours were measured to both interpret abundance estimates and serve as a potential co-indicator of population trends. I found that lynx behaviours and relative abundance were correlated among years with varying abundances of snowshoe hare. Consistent with my predictions, years with greater abundance of lynx and hare were characterized by increases in cheek-rubbing, scent-marking, and grouping behaviours. Variation in behaviour and indices or estimates of abundance proved to be strong co-occurring indicators of the cyclic population dynamics of Canada lynx. Behaviour can serve as an indicator of reproduction, demographics, and survival that both influence and are influenced by population density. Thus, measures of behaviour from individual animals can provide insights into changes in populationlevel occurrence rates at camera traps. 46 Introduction The behaviour of individual animals both influences and is influenced by reproduction and survival. Thus, variation in animal behaviour can result in changes in the distribution and abundance of populations as well as broader community dynamics (Bro-Jorgensen et al. 2019, Green et al. 2019, Higashide et al. 2021). A better understanding of the ecological factors influencing variation in behaviour could aid in the design or interpretation of population surveys. Also, where behavioural changes are related to environmental or ecological conditions, including interspecific interactions (e.g., predator-prey dynamics), they could complement abundance estimates and be used as additional or alternative indicators of population status and trends. In the northern boreal forests of Alaska and Canada, snowshoe hare (Lepus americanus) populations cycle over an 8–11-year period (O’Donoghue et al. 1997, Krebs et al. 2014, Krebs et al. 2017). This change in hare abundance influences the body condition, reproduction, and associated behaviour of predators, such as Canada lynx (Lynx canadensis), and could have implications for methods designed to quantify changes in population abundance of prey and predator. For example, barbed and scented rub pads that rely on cheek-rubbing are among the most commonly used DNA-based method for surveying Canada lynx (McDaniel et al. 2000, Mills et al. 2000, Kendall and McKelvey 2008). Demographic or temporal variation in cheekrubbing behaviour may influence the accuracy, precision, or bias of that technique. Variability in cheek-rubbing or scent-marking is not well understood, but may be influenced by sex, age, habitat, prey and predator density, season, lure type and timing, and previous visits by conspecifics. For example, there can be a distinct seasonal peak in the rubbing behaviour of Canada lynx, coinciding with the breeding season in late winter (Crowley et al. 2013, Crowley et al. 2017). Similarly, the efficacy of hair-snare surveys for Eurasian lynx (Lynx lynx) can also 47 vary by season, being more successful during the breeding period (Schmidt and Kowalczyk 2006). Also, scent-marking can vary by habitat type and prey density. For example, the Sunda clouded leopard (Neofelis diardi) and the Iberian lynx (Lynx pardinus) were more likely to scent mark habitats with a high density of prey (Allen et al. 2016a, Burgos et al. 2018). The frequency and duration of scent-marking by puma (Puma concolor) was influenced by previous visitation of conspecifics (Allen et al. 2016b). Vogt et al. (2016) suggested that Eurasian lynx faced a trade-off between enhancing detection of scent-marks by conspecifics and avoiding detection by prey. These ecological and behavioural factors undoubtedly affected sampling bias and resulting estimates of occupancy and abundance used for the conservation and management of felid species. Non-invasive methods for estimating the abundance of elusive, forest-dwelling carnivores include camera traps, sampling of fecal material or hair for DNA, and surveys of tracks or other sign (Long et al. 2008). Due to their relatively low costs and applications across large landscapes, these surveys are often employed as an alternative or complement to studies that require invasive marking or collaring of individuals (e.g., GPS collars, ear tags). Advances in laboratory techniques and more widespread use of recreational game cameras has reduced per unit costs of sampling and increased reliability allowing for greater sample sizes and more rigorous data collection. In addition to new methods for collecting non-invasive data for population monitoring, there has been considerable innovation in methods for analysing those data. Spatial mark-resight models and count models are used with increasing frequency to generate estimates of population abundance from camera images. The N-mixture count model is one of the more common methods to estimate abundance of completely unmarked wildlife populations (Royle 2004, Priol 48 et al. 2014, Kidwai et al. 2019). This model is attractive because it uses count data at repeatedly sampled sites to estimate abundance and detection probability simultaneously without the need to identify unique individuals (Royle 2004). A latent state N represents the absolute abundance and probability, p, of the detection process (Royle 2004, Royle and Dorazio 2006). The variation in N across sites follows a Poisson distribution where the expected value is logarithmically linked to linear covariates and is assumed to remain constant across multiple observations within each site (Royle 2004). In these models, detection-driven and abundance-driven variation are assumed to occur within sites and between sites, respectively. However, predictions of population abundance can be sensitive to underlying assumptions, including: 1) abundance at each site is random and independent of other sites, 2) population remains closed between surveys, 3) individuals are not double counted, and 4) every individual in the population has an equal detection probability (Royle 2004, Priol et al. 2014, Burgar et al. 2018, Ficetola et al. 2018, Link et al. 2018, Sun et al. 2022). Other challenges include data separation for the abundance and detection components of the N-mixture model and choosing the most accurate and precise model from a set that represent variation in the environmental conditions at each sampling site (Koetke et al. 2024). Canada lynx are generally not recognizable by pelage patterns in the winter and require DNA-based surveys to identify individuals (but see Anderson et al. 2022). Camera trap data and N-mixture models could be useful for monitoring temporal and spatial trends in abundance, but the underlying behavioral processes influencing the precision and reliability of this method are unknown. I used a combination of behavioural responses, abundance estimates, and abundance indices to measure temporal trends in the abundance of Canada lynx. I conducted the analysis for 49 two time periods when the primary prey of lynx, snowshoe hare, was relatively abundant and scarce, according to the well-documented population cycle. I estimated the relative abundance of lynx for a total of six years using N-mixture models and occurrence rates ((lynx occurrence/operational camera days) *100) that were derived from observations at camera traps. For each image, I recorded three behavioural responses by lynx: cheek-rubbing, scent-marking, and grouping. All of these behaviours are associated with reproduction and most likely influenced by population density. My objective was to determine if a combination of abundance and behavioural responses could be used to monitor and interpret cyclic population trends. Also, I estimated lynx abundance using spatial capture-mark-resight (SCMR) to aid in the interpretation of N-mixture abundance estimates. SCMR models are commonly used to estimate the abundance or density of wildlife populations where some individuals are marked (Rich et al. 2014, Efford and Hunter 2017, Doran-Myers et al. 2021). My second objective was to investigate the underlying environmental and behavioural factors influencing cheek-rubbing, scent-marking, and grouping behavior of Canada lynx. Variation in behaviour could result in a spatial or temporal bias in the number of observed lynx and the resulting population estimate or index. I developed a suite of covariates to explain the presence or absence of each behaviour during a lynx occurrence at a camera trap including vertical and horizontal cover, prey and conspecific abundance, season, lure timing, group size, and previous visits by conspecifics. I predicted that cheek-rubbing, scent-marking, and grouping behaviours would be positively influenced by greater hare and lynx densities at sites, prior visits by conspecifics, luring by researchers, and time period relative to the snowshoe hare cycle. Lastly, I predicted that the frequency of scent-marking and cheek-rubbing behaviour would increase with the lynx breeding season (mid-winter; February–mid-March). 50 Materials and Methods Study Area The research was conducted in and adjacent to the John Prince Research Forest (JPRF) in northcentral British Columbia (BC), Canada, which is co-managed by the University of Northern British Columbia, Binche Whut’en, and Tl’azt’en First Nations. The study area is ~390 km2 and characterized by rolling terrain with low mountains (700 m to 1500 m above sea level). The region represents the northern extent of contiguous Douglas-fir (Pseudotsuga menziesii var. glauca) forests in the interior of British Columbia and is dominated by the Sub-Boreal Spruce biogeoclimatic zone (Delong et al. 1993). The area has experienced a wide variety of logging activities over the past 75 years and contains a mosaic of old and young forest (continuum from new harvest to old growth >250 years old) with interspersed deciduous stands. The study area had relatively little forest harvesting during the time of data collection and has not had any significant trapping for almost two decades. The study area is part of a long-term monitoring program investigating the influences of climate and landscape change on the distribution and abundance of carnivore communities in central BC. Field Data Collection I deployed 66 camera traps (Bushnell Trophy Trail Cameras models 119467 and 11947; Bushnell Outdoor Products, Missouri, USA) on a hexagonal grid (2.5 km apart; 5.41 km 2 cell size) from January–March in 2015 (23 Jan–03 Apr) and 2016 (01 Feb–10 Apr) and from June– October (22 Jun–19 Jul; 12 Aug–08 Sep; 22 Sep–19 Oct) in 2016. In 2014, I deployed cameras at 41 of these same locations from 12 February–08 April. Data from January–April represented the winter period, and June–October the snow-free period. In 2020–2022, camera traps 51 (Browning Dark Ops HD Pro Trail Cameras model BTC-6HDP; Browning, Utah, USA) were set at the same sites as 2015–2016. Although the same camera sites were monitored continuously from January 2020–April 2022, I used time periods in which the highest proportion of cameras were active, survey starts coincided with camera check and lure days, and survey timing overlapped with dates in 2014–2016. I only included sites in the analyses in which the remote camera was active >50% of the survey period. A total of four cameras were removed from the snow-free high period as well as one camera from the snow-free low period due to camera malfunction. The 2014–2016 and 2020–2022 data sets represented periods of high and low hare abundance, respectively. Although the exact timing of the peak and trough in hare populations was uncertain, the data represented two time periods of contrasting abundance. Occurrence rates of snowshoe hares at camera traps decreased 73% between the two winter periods. This trend was supported by a 40% decrease in hare densities measured at pellet plots established 3 years after the estimated hare peak (2018–2021; John Prince Research Forest, unpublished data). The hexagonal grid was randomly placed on the study area and cameras set near the center of each 5.41-km2 cell. Although some camera traps were set near roads and trails, none were set directly along these linear features. At each camera site, a scent post was established 2.5–3 m directly in front of a camera trap between 0.5 and 1 m above the ground on a tree. This set-up maintained a consistent height and angle of view to the scent post. Each scent post consisted of a small diameter log (<15 cm) secured with one end above the ground (45 cm) and pointing directly at the camera. A local commercial lure containing beaver (Castor canadensis) castor and catnip oil was placed at the end of the log. A small piece of American beaver meat (~5-cm diameter) was hung by wire directly above the end of the log (~60 cm) to serve as an 52 additional attractant during winter. Bait was consumed quickly by most carnivores, but its scent continued to serve as an additional lure to encourage animals in the vicinity of the camera trap to move into view. Cameras were checked and lure and bait added every two weeks in the winter and every four weeks in the snow-free months. Only lure was added to sites during snow-free months due to bear activity. In 2014–2016, cameras were set to take 30s of video with a 1s delay between video-recordings. In 2020–2022, cameras were set to take 10s of video with a 1s delay between video-recordings. These schedules allowed for nearly continuous recording of the time an animal was in view. Sampling and Ecological Variables N-mixture Models The study area had a forest inventory derived from high-density light detection and ranging (LiDAR; 8–10 pulses/m2) data obtained in August and September 2015. Independent covariates for N-mixture models were represented by three broad categories that included forest cover and structure, disturbance, and prey abundance (Table 5). The number of days since lure was added to a site by a researcher was included as a detection covariate. Variables representing forest cover and structure from LiDAR data included canopy closure at 4 vertical layers calculated at the stand polygon scale (ground (0–1m), low (1–3m), mid (3–10m), and top (>10m)). I used GIS data to measure the distance of each camera site to riparian edge, proportion of area (1000m radius) containing recent cutblocks (<20 years in age), and proportion of area (1000m radius) containing potential hare habitat (forest 21–50 years in age). I included a prey covariate that represented hare abundance. Relative hare abundance was calculated using N- 53 mixture models and camera data (24-hour independent visit). I calculated a hare abundance estimate for each site and season. Lynx Behaviour I developed a number of ecological and temporal variables that were hypothesised to explain the behaviour of lynx at each camera trap. I used LiDAR data to calculate measures of vegetation structure at three vertical heights within a 50-m radius of a camera location: ground-low (0–3m), mid (3–10m), and top (>10m; Table 5). Temporal covariates included time of day (day or night), season ((mid-winter (23 January–15 March), late winter (16 March–30 April), early summer (23 June–30 July), late summer (01 August–15 September), fall (16 September–31 October)) and hare abundance relative to an assumed peak and trough in the cycle (2015–2016 = high hare, 2020–2022 = low hare). I related behaviour to the abundance of lynx and hare at each site, as calculated using N-mixture models and occurrence rates (see previous section). Other covariates included the number of days since bait and lure were added to a site by researchers, the number of days since a site was last visited by a lynx, and number of individuals in a group of lynx (binary; 1 or >1 individual). 54 Table 5. Variables used in the development of models predicting abundance (N-mixture models) or behaviours (cheek-rubbing, scent-marking, grouping) of Canada lynx (Lynx canadensis) using camera traps in central British Columbia, Canada, 2014–16 and 2020–22. Parameter cover (1–3)* cover (3–10)* cover (10+)* #hare* #lynx period season daily lure days lynx days group size new harvest age** hare age** riparian** Description Average canopy cover 0–3 m (LiDAR, stand polygon) Average canopy cover 3–10 m (LiDAR, stand polygon) Average canopy cover >10m (LiDAR, stand polygon) Site abundance estimates of snowshoe hare (N-mixture models) Site abundance estimates of lynx (N-mixture models) Hare abundance period (2015–2016 = high, 2020–2022 = low) Mid-winter, late winter, early summer, late summer, fall Behavior occurred at night or day Number of days since bait and lured added to a site Number of days since last visited by a lynx 1 individual or >1 individual Proportion of 1000-m buffer with forest age >20 years old Proportion of 1000-m buffer with forest age 21–50 years old Distance to riparian edge Variable type Continuous Continuous Continuous Continuous Continuous Categorical Categorical Categorical Continuous Continuous Categorical Continuous Continuous Continuous *N-mixture and behaviour models, **N-mixture models only Data Analysis Population Estimates and Indices I used the “unmarked” package (version 1. 4. 1) in R (version 4. 3. 2) to fit N-mixture models (pcount) to estimate abundance of Canada lynx and snowshoe hare at camera trap sites in six winters (Fiske and Chandler 2011). To minimize double counting at the same site and detection of the same individual at multiple sites within a single occasion, I used an 8-hr image interval to define an independent visit to avoid double counting of individuals. I used time periods that did not overlap with major changes in ecological conditions to lessen potential violations of 55 population closure. For example, I did not include data beyond mid-April for N-mixture models to avoid spring break up and dispersing juveniles. Although there is potential for individual- and sex-biased detection, I was not able to test this assumption with my sample size of collared individuals. I used a 2-step model fitting process where I first fit detection models with and without a single covariate of lure days and no independent variables for abundance. This covariate represented the number of days since lure and bait were added to a site by researchers. I then selected the best fitting detection model (with or without lure variable) to use with the abundance model. Each model contained a single covariate for predicting abundance resulting in 7 models: cover at three vertical strata, proportion young forest, proportion older regenerating forest, distance to riparian, and site-specific hare abundance. I fitted the 8-model set (including a null model) for each winter season and year (2014, 2015, 2016, 2020, 2021, 2022). I used linear regression to estimate correlation (r) and compare trends in abundance estimated by N-mixture models with relative abundance indices of camera occurrence rates (number of camera occurrences/number of operational camera days). This comparison was conducted temporally over the 6-year period (average camera occurrences per day/operational camera days) and spatially among camera sites in each year (camera occurrences per site/operational camera days). I used spatial capture–mark–resight (SCMR; “secr” package (version 4. 6. 4) in R (version 4. 3. 2)) to estimate Canada lynx density within the study area during the winter and hare low period (2020–2002). That analysis allowed me to investigate the reliability and precision of estimates with unmarked animals (i.e., N-mixture, indices of occurrence rates). This method uses a combination of detection data of marked individuals at survey sites and counts of unmarked individuals to estimate activity centers and model detection probabilities based on the 56 distance of survey sites from these activity centers (Efford et al. 2009, Efford and Hunter 2017). I parameterised the SCMR model with images of individual lynx that were identified with GPS (Global Positioning Systems) collars (Lotek LiteTrack 250) and uniquely colored ear tags at camera traps from 2020–2022. In 2021, I had insufficient sample size of marked individuals to conduct the SCMR analysis. Capture and handling protocols can be found in in Chapter 2. Research protocols for lynx were approved by the UNBC Animal Care and Use Committee (Protocol # 2020-3) and British Columbia Government (BC Wildlife Act, Permit PG19-596814). Observations of lynx for the SCMR models included capture data when collaring individual animals, capture histories of marked individuals at camera sites, and counts of unmarked or unknown lynx generated with camera data. For SCMR models in 2020, there were 4, 1-week marking occasions and 4, 1-week sighting occasions. In 2022, there were 3, 1-week marking occasions and 5, 1-week sighting occasions. I tested three SCMR models for lynx density: 1) model with no independent covariates (null), 2) model with detection probability varying between occasion type (marking or sighting), and 3) model with a habitat variable for forest age. I developed a relatively simple index of lynx habitat that included non-habitat (water bodies > 50 hectares) and categorical forest age (young = <20 yrs., mid = 21–50 yrs., and old = >51 yrs.). The sampling area was buffered by 6 and 8 km in 2020 and 2022, respectively. That buffered area, representing the range of collared lynx within and outside the study area, prevented the use of LiDAR data. All models were adjusted for overdispersion of count data. I compared density estimates generated from SCMR and N-mixture models. I used confidence intervals and relative standard error (RSE) to assess the precision of estimates. 57 Lynx Behaviour I used an Information Theoretic Model Comparison (ITMC) approach to develop a set of 9 logistic regression models that represented hypotheses explaining the display of lynx behaviour (Burnham and Anderson 2004; Table 6). Camera images revealed the presence (1) or absence (0) of a behavior at each site. I developed and compared the models independently for each behavioural type: cheek-rubbing, scent-marking, and grouping. The group size covariate was not included in any models used to explain lynx grouping behaviour. I used Akaike’s information criterion for small sample sizes (AICc) to identify the most parsimonious model (Burnham and Anderson 2004). I used both ΔAICc and Akaike weights (AICcw) to rank and compare models. Table 6. A priori candidate models (logistic regression) representing three types of behaviour (cheek-rubbing, scent-marking, grouping) of Canada lynx at remote camera sites in central British Columbia, Canada, 2015–2016 and 2020–2022. Model Name Canopy cover Hare abundance Activity + scent Lynx abundance Temporal Combined 1 Combined 2 Combined 3 Null Model cover (0–3 m) + cover (3–10 m) + cover (10+ m) #hare daily + lure days + lynx days #lynx + group size period + season hare + period + season + lure days season + group size + lure days + cover (0–3 m) period + season + group size + lure days + cover (0–3 m) + #lynx no independent covariates 58 K 4 2 4 3 6 8 8 10 1 Receiver operating characteristics and resulting area under the curve (AUC) were used to assess the predictive ability of the best model (Pearce and Ferrier 2000). I used a onefold cross validation routine to withhold each record sequentially from the model building process and then calculated the independent probability of that withheld record being the presence of a behaviour. I considered a model with an AUC score of 0.7 to 0.9 to be a useful application and a model with a score >0.9 as highly accurate (Boyce et al. 2002). I used 95% confidence intervals to assess the strength of effect of each predictor covariate on the dependent variable. Poor power and inconclusive statistical inference was expected from covariates with confidence intervals that approach or overlap 0. I used tolerance scores to assess variables within each model for excessive collinearity (Menard 2001). All data analyses were performed using Stata (version 17.0; Statacorp, College Station, Texas). I compared trends in the proportion of each behaviour in each year to both camera occurrence rates and N-mixture abundance estimates using standard linear regression and correlation (r). Lastly, I tested for correlation between lynx and hare abundance estimates generated with N-mixture models over the 6-year period and spatially within camera sites in each year. Results Camera Traps In 2015–2016, cameras functioned properly an average of 96.0% (SE = 0.9; 8,866 camera-days) and 90.3% (SE = 2.4; 5,008 camera-days) of potential camera days in the winter and snow-free periods, respectively. In 2020–2022, cameras functioned properly an average of 95.1% of potential camera days in the winter (SE = 0.8; 13,181 camera-days) and 91.1% (SE = 1.4; 10,101 59 camera-days) of potential camera days in the snow-free periods. There was a 76.2% and 65.9% decrease in lynx occurrence rates between 2015–2016 and 2020–2021 during the winter and snow-free seasons, respectively. There was a similar steep decrease in snowshoe hares (72.7% = winter, 79.0% = snow-free). Population Estimates and Indices The top N-mixture models varied between years but included models with canopy cover 3–10 m (2014 and 2015), canopy cover 1–3 m (2021 and 2022), and proportion of forest 21–50 years old (2016; Appendix 2.1). For all top models, the single covariate positively influenced the abundance of lynx. The detection model including the number of days since lure and bait were added to a site ranked higher than the null model only in 2016. Estimates of density ranged from 15 lynx/100km2 (CI = 11–21) in 2016 to 7 lynx/100km2 (CI = 4–12) in 2021 (Table 7; Figure 7). Corresponding camera occurrence rates were 11.1 lynx/100 camera days in 2016 and 1.9 lynx/100 camera days in 2021. N-mixture estimates and camera hits for both lynx and hare were strongly correlated spatially by site and temporally over the 6-year period of study. The population trend for lynx showed an increasing population from 2014–2016 with a decrease four years later from 2020–2021. Abundance estimates were still low in 2022 but with some evidence of a slight increase. Although the overall trend was similar for snowshoe hare compared to lynx, there was a decrease in hare abundance rather than an increase from 2015 to 2016. Relative standard errors ranged from 17% in 2016 to 37% in 2021 (Table 7). 60 Figure 7. Comparison in trends of relative abundance indices (RAI; number of captures/number of camera days x 100) and N-mixture abundance estimates with 95% confidence intervals for Canada lynx (Lynx canadensis) using camera traps in central British Columbia, Canada, 2014– 2016 and 2020–2022. Spatial capture-mark-resight (SCMR) estimates for 2020 and 2022 provide an additional measure for validating estimates of relative abundance from camera images and estimates of abundance from N-mixture models. 61 Table 7. Density estimates from spatial capture-mark-resight (SCMR) and N-mixture models for Canada lynx (Lynx canadensis) and snowshoe hare (Lepus americanus) using camera traps in central British Columbia, Canada, 2015–16 and 2020–2022. RSE = relative standard error. Estimate method Year Species SCMR 2020 Lynx SCMR 2022 Lynx N-mixture 2014 Lynx N-mixture 2015 Lynx N-mixture 2016 Lynx N-mixture 2020 Lynx N-mixture 2021 Lynx N-mixture 2022 Lynx N-mixture 2014 Hare N-mixture 2015 Hare N-mixture 2016 Hare N-mixture 2020 Hare N-mixture 2021 Hare N-mixture 2022 Hare 2 * = lynx/100km , hare/hectare Density* 2.64 2.89 9.16 12.72 14.80 11.31 6.63 7.92 0.23 0.24 0.19 0.15 0.14 0.18 SE 0.71 0.71 2.38 2.30 2.52 3.28 2.45 2.14 0.07 0.04 0.04 0.04 0.05 0.04 LCI 1.57 1.80 4.50 8.21 9.86 4.88 1.83 3.73 0.09 0.16 0.12 0.08 0.04 0.10 UCI 4.44 4.63 13.82 17.23 19.74 17.74 11.43 12.11 0.37 0.32 0.26 0.22 0.24 0.26 RSE 26.9% 24.6% 26.0% 18.1% 17.0% 29.0% 37.0% 27.0% 30.4% 16.7% 20.0% 23.3% 35.7% 21.7% There were 35 resights of seven GPS-collared lynx in 2020, and 41 resights of eight collared lynx in 2022. Collared lynx represented 49% and 45% of all lynx occurrences at camera traps in 2020 and 2022, respectively. Population density estimates using SCMR models were similar between 2020 (3 lynx/100km2 [CI = 2–4]) and 2022 (3 lynx/100km2 [2–5]) with reasonable precision (RSE of estimate = 26.9% and 24.6%, respectively). The top model for both years allowed detection probability to vary between marking and resighting occasions. SCMR abundance estimates were less than N-mixture models and had non-overlapping confidence intervals. 62 Behaviour Models The top-ranked regression model explaining cheek-rubbing behaviour included covariates representing temporal factors, lynx abundance, vegetation cover, and the diminishing effect of bait and lure (model = Combined 3; AICcw = 1.00; Table 8). Those covariates were effective at predicting cheek-rubbing (AUC = 0.75, SE = 0.01). Rubbing behaviour was positively associated with a period of hare abundance (2015–2016), mid-winter and early summer seasons, groups of lynx, more ground cover, and lynx abundance at camera sites (Figure 8). Covariates with negative associations included the fall and late winter seasons as well as the number of days since bait and lure were added to a site by a researcher (i.e., rubbing behaviour increased closer to lure dates). The highest ranked model explaining scent-marking by lynx included covariates for hare abundance, lure days, period, and season (model = Combined 1; AICcw = 0.998; Table 8). Scentmarking was positively associated with hare abundance both temporally (2015–2016 period) and spatially at camera trap sites, and negatively associated with the mid-winter season (Figure 8). However, that model had poor predictive accuracy (AUC = 0.61, SE = 0.01). Two of the combined models for lynx grouping behaviour were considered equivalent (ΔAICc < 2; >95% of AICcw). For both models, lynx grouping was positively associated with a period of hare abundance (2015–2016) and the mid-winter season, and negatively associated with the early summer season and increasing days since lure was added to a site (Figure 8). Both models had reasonable predictive accuracy (AUC = 0.68–0.69, SE = 0.02). There was a strong, positive correlation (r) between abundance estimates for lynx during winter and each type of behaviour (Table 9; Figure 9), but that relationship was especially 63 pronounced for cheek-rubbing behaviour (r = 0.96). Although there was a strong positive correlation between lynx and hare abundance annually from 2014–2022 (r = 0.95), there was no or very weak correlation between site-specific hare and lynx abundance estimates within each year (r mean = 0.23, SE = 0.04). Coefficients 64 Table 8. AICc scores, and AICc weights (w) for logistic regression models predicting Canada lynx (Lynx canadensis) behaviours at camera traps in central British Columbia, Canada, 2014– 2016 and 2020–2022. Area under the curve (AUC) and standard error (SE) for the receiver operating characteristic represents the predictive accuracy of each model (top 95%). Model Cheek-rubbing Combined 3 Combined 1 Temporal Combined 2 Lynx abundance Activity + scent Canopy cover Hare abundance Null Scent-marking Combined 1 Combined 3 Temporal Hare abundance Lynx abundance Activity + scent Combined 2 Canopy cover Null Lynx grouping Combined 1 Combined 3 Temporal Combined 2 Activity + scent Canopy cover Hare abundance Lynx abundance Null K AICc ΔAICc w AUC (SE) 10 8 6 8 3 4 4 2 4 1910.6 1981.9 2011.9 2052.5 2089.6 2200.7 2229.4 2240.7 2263.5 0.0 71.3 101.3 141.9 179.0 290.1 318.8 330.1 352.9 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 (0.01) 8 10 6 2 3 4 8 4 4 2090.2 2104.0 2105.3 2119.6 2134.6 2140.3 2144.8 2152.1 2155.7 0.0 13.8 15.1 29.4 44.4 50.1 54.6 61.9 65.5 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 (0.01) 8 10 6 8 4 4 2 3 4 763.3 764.0 768.4 799.3 809.8 815.7 818.2 819.1 822.3 0.0 0.7 5.1 36.0 46.5 52.4 54.9 55.8 59.0 0.55 0.40 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.68 (0.02) 0.69 (0.02) 65 Table 9. Spatial and temporal correlations (r) between occurrence rates (OR) generated with camera images, N-mixture (N-mix) abundance estimates, and lynx behaviours for Canada lynx (Lynx canadensis) and snowshoe hare (Lepus americanus) using camera traps in central British Columbia, Canada, 2014–16 and 2020–22. Comparison Species Year Correlation (r) Spatial (camera trap sites, n = 198 (hare low), n = 173 (hare high) OR and N-mix lynx 2014–2016 0.95 OR and N-mix lynx 2020–2022 0.88 Lynx and Hare (N-mix) lynx/hare 2014–2016 0.23 Lynx and Hare (N-mix) lynx/hare 2020–2022 0.21 Lynx and Hare (OR) lynx/hare 2014–2016 0.21 Lynx and Hare (OR) lynx/hare 2020–2022 0.19 Temporal (Annual winter, n = 6) OR and N-mix lynx 2014–2022 0.91 OR and N-mix hare 2014–2022 0.77 Lynx and Hare (N-mix) lynx/hare 2014–2022 0.95 Lynx and Hare (OR) lynx/hare 2014–2022 0.69 Cheek-rubbing and N-mix lynx 2014–2022 0.96 Cheek-rubbing and OR lynx 2014–2022 0.91 Scent-marking and N-mix lynx 2014–2022 0.94 Scent-marking and OR lynx 2014–2022 0.83 Lynx group and N-mix lynx 2014–2022 0.92 Lynx group and OR lynx 2014–2022 0.87 66 Figure 8. Coefficients for top-ranked models illustrating the presence of behaviours (cheekrubbing, scent-marking, and grouping) of Canada lynx (Lynx canadensis) at camera trap sites during contrasting periods of prey abundance in central British Columbia, Canada, 2015–2016 (high) and 2020–2022 (low). MW = mid-winter, LW = late winter, ES = early summer, LS = late summer. 67 Figure 9. Canada lynx (Lynx canadensis) abundance and presence of behaviours (percentage of visits with each behaviour recorded) in each year (cheek-rubbing, scent-marking, and grouping) at camera trap sites during contrasting periods of prey abundance in central British Columbia, Canada, 2014–2016 (increasing - high) and 2020–2022 (decreasing - low). 68 Discussion Few studies have quantified individual- or population-level behaviours to changes in population abundance (O’Donoghue et al. 1998a, Green et al. 2019, Higashide et al. 2021). This is one of the first studies to combine co-occurring indicators of behaviour and abundance to measure cyclic trends. Lynx behaviours, occurrence rates, and relative abundance estimates followed similar patterns among years and between hare abundance periods. Consistent with my predictions, years with greater lynx and hare abundance were characterized by increases in cheek-rubbing, scent-marking, and grouping behaviours. The combination of abundance and behaviours indicative of body condition and reproduction provided insights into the ecological drivers of population change. My results provide support for the use of camera traps to measure population and behavioural trends for Canada lynx. Similar relationships may hold for other felids that are known to demonstrate repeated scent-making behaviours (e.g., Allen et al. 2016a, b). All behaviours by lynx were positively associated with the period when snowshoe hares were most abundant in my study area (i.e., 2015–2016). Also, scent-marking varied spatially, increasing at camera sites with greater hare abundance. I developed an accurate model representing cheek-rubbing by lynx, with a positive relationship between that behaviour and sitespecific estimates of lynx abundance, lynx groups, and increased ground cover. The proportion of lynx occurrences with cheek-rubbing differed among years (8–59%) but was strongly associated with years of greater hare abundance. The combination of fewer lynx and lower propensity for cheek-rubbing during the low in hare abundance have implications for monitoring or research reliant on sampling of DNA contained in hair. Although hair sampling has been used with success during a winter with high lynx densities (Doran-Myers et al. 2021), I found it to be 69 unreliable during a low in the lynx-hare cycle. Variable cheek-rubbing among years can result in inconsistent DNA collection and imprecise population estimates that may mask inter-year or cyclical variation in lynx abundance. For example, I used DNA from rub-stations and spatially explicit capture-recapture (SECR) models that were not included in this study to estimate lynx abundance during three years of the population low, but few recaptures and the non-detection of multiple collared animals resulted in imprecise estimates (RSE = 60–120%). Previous studies have documented increased cheek-rubbing during late winter that coincided with lynx breeding (Crowley et al. 2013, Crowley et al. 2017). I found a similar increase in cheek-rubbing during the breeding season, but the presence of cheek-rubbing was also positively associated with early summer. Canada lynx typically give birth in May and June and the early summer coincides with rearing of lynx kittens at den sites (Anderson and Lovallo 2003). However, if an increase in cheek-rubbing were due to kitten rearing and associated territoriality, I would expect it to occur only in years with lynx litters and this was not the case. This same pattern of behaviour occurred in years with no apparent lynx reproduction in my study area. From February 2020–May 2022, no lynx kittens were observed on my camera traps. The application of catnip to scent poles at camera sites may partially explain increased cheek-rubbing in early summer (Uenoyama et al. 2021). Most felid species have a positive neurophysiological response to catnip (nepetalactone; Todd 1962, Hill et al. 1976, Tucker and Tucker 1987), and its chemical compounds have been found to repel mosquitoes following rubbing behaviour in domestic cats (Uenoyama et al. 2021). The early summer period coincides with the most intense insect activity of the year. Further study is required to determine if chemical defense and insect avoidance are a potential explanatory mechanism of cheek-rubbing in response to catnip during this time of year. 70 Kenney et al. (2024) found that camera occurrence rates were strongly correlated with density estimates or other population indices for several boreal forest mammals. For Canada lynx, indices of relative abundance based on camera trap and snow track surveys produced similar population trends (Kenney et al. 2024). I found a strong positive correlation between occurrence rates and N-mixture abundance estimates. In agreement with Kenney et al. (2024), my results provide additional support for the use of camera traps to monitor trends in lynx and hare populations. I urge caution, however, in using N-mixture models to estimate absolute abundance. Although N-mixture estimates and occurrence rates followed similar temporal and spatial patterns of abundance (see Figure 7; Table 7), confidence intervals for N-mixture estimates were wide and overlapping between years. Additionally, in the two years I had markresight estimates for comparison, N-mixture estimates were 3–4 times greater than estimates generated with the SCMR model. The 3 lynx/100 km2 density estimate produced by SCMR methods was ecologically plausible, matching estimates of lynx density during hare lows in the boreal forest (Brand et al. 1976, Poole 1994, Slough and Mowat 1996, O’Donoghue et al. 1997). SCMR models were parameterised using a large number of resighted individuals (35 resights of 7 lynx in 2020; 41 resights of 8 lynx in 2022) with collared lynx representing 49% and 45% of all lynx occurrences at camera traps in 2020 and 2022, respectively. For these reasons, I consider SCMR estimates to be reliable and reasonably precise. Although I adopted a conservative measure of independent camera observations (i.e., 1-day counts with 8-hr intervals to define an independent visit), N-mixture models were likely sensitive to this model violation, possibly biasing the results (Barker et al. 2018, Link et al. 2018). Although N-mixture models may not be suitable for estimates of absolute abundance they proved useful for measuring relative abundance and population trends in my study. Strong positive correlations between annual abundance 71 estimates and behavioral cues (r = 0.92–0.96) further support their use as a measure of population trends. However, occurrence rates were also strongly correlated with both N-mixture estimates and behaviours providing a reliable, yet simpler, method for monitoring population trends. Abundance of hare and lynx were strongly correlated between years, but not spatially at camera traps within each year. This density-habitat relationship may explain why the abundance of lynx and hare tracked temporally but not spatially among camera sites that varied considerably in vegetation cover. Several studies have suggested that lynx may not be able to hunt hare sufficiently in dense forest (Mowat et al. 2000, Fuller et al. 2007) and that habitat with dense understory may provide a refuge for hares during cyclic lows (Wolff 1980, O’Donoghue et al. 1998b). For this reason, lynx may be more numerous at sites with intermediate cover (Mowat et al. 2000, Fuller et al. 2007). I found that time since bait and lure were added to a site was not a significant influence on the detection probability of lynx in N-mixture models. This suggests that lure and bait had little influence on the number of images recorded by cameras and estimates of abundance for lynx in my study area. Once a lynx was at a site, however, lure positively influenced cheekrubbing and scent-marking behaviours. Bait and lure primarily encouraged animals already in the vicinity of the camera trap to engage in cheek-rubbing and scent-marking. Contrary to my predictions and in contrast to pumas (Puma concolor; Allen et al. 2016b), time since a previous visit by a conspecific did not influence these behaviours. Differences in behaviour between the low and high in hare abundance may be explained by a combination of lynx density and reproduction. During highs in hare abundance, lynx movements decrease as individual animals spend less time and effort searching for prey (Nellis 72 and Keith 1968, Brand et al. 1976, Wards and Krebs 1985). Less energy devoted to hunting may provide more energy for reproduction and associated behaviours such as cheek-rubbing, scentmarking, and grouping. Breeding pairs of male and female lynx were commonly recorded on camera traps displaying these behaviours during the hare high. Additionally, greater lynx densities may increase breeding competition and further influence the frequency of these behaviours that can be related to intraspecific interactions. Conversely, during lows in hare abundance, lynx increase movements but consume less biomass of prey (Brand et al. 1976). Lynx in my study area did not have kittens or form breeding pairs, and engaged less frequently in cheek-rubbing and scent-marking behaviours during the apparent low in the hare cycle. Other behaviours besides those associated with reproduction may change throughout the lynx-hare cycle. O’Donoghue et al. (1998a) identified changes in lynx behaviour that included differences in hunting methods, kill rates, and prey caching. Their study relied on backtracking that can be labor intensive, dependent on snow conditions, and typically limited to smaller areas. Camera traps, especially video footage, provided unique insight into behaviours over a large area that has not been available with other survey methods. Variation in behaviour and indices or estimates of abundance proved to be strong co-occurring indicators of the cyclic population dynamics of Canada lynx. Behaviour is an indicator of reproduction, demographics, and survival that both influence and is influenced by population density; thus, providing insights into the why for changes in occurrence rates at camera traps. In addition, changes in some behaviours may be indicators of future trends in population abundance. For example, increases in cheek-rubbing related to improvements in ecological conditions (i.e., prey abundance or body condition) could signal changes in breeding activity that may not affect population abundance for another year. A smaller number of sites could be used to monitor behaviours and inform the timing of more 73 intensive monitoring efforts required for estimating abundance. Accurate assessment of trends over time will ultimately improve management and conservation efforts for Canada lynx and other species where behaviour and occurrence can be monitored simultaneously. 74 Chapter 4: Short-term fluctuations in prey and its influence on a carnivore community: Habitat co-occurrence of Canada lynx and sympatric mesopredators increases following cyclical reduction in primary prey Abstract In multi-predator systems, niche expansion may increase habitat overlap among species and the potential for competitive or predatory interactions. The strength of those interactions is likely mediated by prey availability. Although interspecific competition may drive habitat specialization and niche partitioning, that differentiation may not evolve when prey populations cycle in large amplitudes and over short durations. In the northern boreal and subboreal forests of Alaska and Canada, snowshoe hare populations cycle over an 8–11-year period and that variation can strongly influence the distribution and population dynamics of carnivores. I used camera traps to investigate the influence of sympatric carnivores (coyote, fisher, wolverine) and prey (snowshoe hare, red squirrel) on the habitat use and co-occurrence of Canada lynx during two contrasting periods of hare abundance. Given optimal foraging theory and the relatively short interval between changes in prey abundance, I predicted that habitat overlap and co-occurrence would increase during a low in hare abundance when Canada lynx hunt alternative prey in varied habitats. I found that lynx occurrences mirrored the decrease in hares, while the number of sympatric carnivore species as well as the combined occurrences of these species increased during the low in hare abundance. The co-occurrence of lynx with other sympatric carnivores increased at a time of prey scarcity. Predator populations in subboreal forests may be in a dynamic state of habitat overlap dependent on cyclic prey abundance. Canada lynx may lose 75 their competitive advantage during hare lows and be especially vulnerable to cumulative forest change and future climate conditions that are beneficial to many of their sympatric competitors. Introduction When resources are limiting, optimal foraging theory states that a species expands the breadth of habitat and diet (Emlen 1968, MacArthur and Pianka 1966). ,In a multi-predator system, niche expansion by each individual species could then increase habitat overlap among species and the potential for competitive or predatory interactions. During long-term resource limitation, interspecific competition may reduce niche overlap through habitat specialization and niche partitioning (Hardin 1960, Rosenzwieg 1981). Short-term resource fluctuations, however, are more likely to result in an increase in the breadth a species’ niche rather than specialization as the latter is often the result of longer-term processes such as competitive exclusion, adaptation, and natural selection (Hardin 1960). Wiens (1977) suggested that co-existing species may follow a high-low-high sequence of niche overlap in response to fluctuating resources; responding opportunistically to the same abundant resources but with lessened competition, specializing as resources become more limiting, and increasing their niche overlap and competitive interactions as resources become scarce. In systems where prey populations cycle in large amplitudes and over short durations, there may be insufficient time for the development of behaviours or resource use that facilitates niche partitioning. In this scenario, populations would be in a dynamic state of niche overlap dependent on prey-predator densities at a particular stage in a cycle. 76 In the northern boreal forests of Alaska and Canada, snowshoe hare (Lepus americanus) populations cycle over an 8–11-year period that results in contrasting years of prey abundance for the carnivore community (high to high or low to low; (Krebs et al. 2014, Krebs et al. 2017, O’Donoghue et al. 1997, Slough and Mowat 1996). Canada lynx (Lynx canadensis; hereafter lynx), in particular, cycle asynchronously with snowshoe hare and are considered a specialist on this prey species (Krebs et al. 2014, Krebs et al. 2017, O’Donoghue et al. 1997). Red squirrels (Tamiascurus hudsonicus) are often the second most dominant prey item in lynx diet, typically contributing more during lows in snowshoe hare abundance (Aubry et al. 2000, Koehler 1990, O’Donoghue et al. 1998b). The dominance of snowshoe hare in lynx diet is especially evident during the winter with secondary prey becoming more common during the snow-free seasons (Mowat et al. 2000, Parker et al. 1983, Saunders 1963). Coyote (Canis latrans) and great-horned owl (Bubo virginianus) can also demonstrate asynchronous cycling dynamics in response to changes in the abundance of hare in the boreal forest (O’Donoghue et al. 2001, Rohner et al. 2001, Tyson et al. 2010). Although less pronounced, fisher (Pekania pennanti) populations in Ontario have shown a delayed and positive numerical response to increases in hare abundance (Bowman et al. 2006). Unlike lynx, coyotes and fishers are generalists that may be better able to adapt to low hare numbers by supplementing their diet with other prey. Although large fluctuations in the abundance of hare affect different predators to varying degrees, the hare cycle results in contrasting periods of prey biomass that likely has strong influences on community dynamics. Generalist predators are thought to have a stabilizing effect on predator-prey cycles. The influence of generalist predators on lynx populations, especially during cyclic lows in hare numbers, is unclear. Previous studies have focused on potential coyote and lynx interactions by 77 measuring numerical, functional, and behavioral responses to changes in hare abundance of each species individually (Murray et al. 1994, O’Donoghue et al. 1997, O’Donoghue et al. 1998a, b). Coyotes and fishers can be both exploitative and interference competitors as well as occasionally preying on lynx (McClellan et al. 2018, O’Donoghue et al. 1995, O’Donoghue et al. 1998b). In Maine, predation was the leading cause of mortality for Canada lynx (28%) with 77% of predation events (14 of 18) over a 12-year period caused by fishers (McLellan et al. 2018). Although wolverine (Gulo gulo) typically occupy a different ecological niche than lynx, their diets overlap, wolverine may be the dominant species in interference competition (Jung et al. 2023), and snowshoe hare can be a high proportion of wolverine diet (Banci 1987, Robitaille et al. Unpubl. Data ). Lynx in central British Columbia (BC) are sympatric with coyotes, fisher, and wolverine and no studies have investigated the habitat overlap and co-occurrence of lynx with this assemblage of other predators. Habitat loss and fragmentation can have a significant influence on species distribution, but these changes can also affect interspecific interactions, making it difficult to disentangle the influence of habitat and interspecific interactions on species distribution (Estevo et al. 2017, Fisher et al. 2012). Approximately 18 million hectares of BC’s forests have been affected by a mountain pine beetle (Dendroctonus ponderosae; MPB) epidemic that began in the mid-1990s (BC FLNRO, 2012). From 2001–2017, the Allowable Annual Cut (AAC) was increased to salvage dead and dying lodgepole pine (Pinus contorta) trees. This resulted in fundamental changes to the age distribution of forests across large portions of central BC with implications for wildlife habitat (FPB, 2009). It is currently unknown how large-scale changes in habitat loss and fragmentation will affect the cyclic dynamics of snowshoe hares and their predators. Historically, most studies of species distribution have focused on the relationship between 78 individual species and habitat covariates one at a time, partly due to the difficulties of accurately measuring and implementing multi-species studies. The development of more inexpensive and reliable trail cameras for multi-species detection have opened the possibility of investigating a fuller range of community interactions. I investigated the influence of sympatric mesopredators (coyote, fisher, wolverine) and prey (snowshoe hare, red squirrel) on the habitat use and co-occurrence of lynx during two contrasting periods of hare abundance. Natural cycles in hare populations provide an opportunity to investigate the influence of short-term food abundance and scarcity on the habitat overlap and co-occurrence patterns of sympatric predators. Although not sufficient to assess the full range of competitive interactions (spatial and temporal interactions, diet; Murray et al. 2023), differences in habitat co-occurrence across temporal variation in resource availability can provide important insights into potential community interactions. Habitat overlap may be an indicator of potential competition between species (Murray et al. 2023). However, my intention was not to directly assess competition but to measure habitat overlap during two contrasting periods of prey abundance. Given optimal foraging theory and the relatively short interval between changes in prey abundance, I predicted that habitat overlap and co-occurrence would increase during a low in hare abundance when Canada lynx hunt alternative prey in varied habitats. Materials and Methods Study Area The research was conducted in and adjacent to the John Prince Research Forest (JPRF) in northcentral BC, Canada, which is co-managed by the University of Northern British Columbia, Binche Whut’en, and Tl’azt’en First Nations. The study area is ~390 km2 and characterized by 79 rolling terrain with low mountains (700 m to 1500 m above sea level). The region represents the northern extent of contiguous Douglas-fir (Pseudotsuga menziesii var. glauca) forests in the interior of British Columbia and is dominated by the Sub-Boreal Spruce biogeoclimatic zone (Delong et al. 1993). The area has experienced a wide variety of logging activities over the past 75 years and contains a mosaic of old and young forest (continuum from new harvest to old growth >250 years old) with interspersed deciduous stands. The JPRF harvested approximately 20,000 m3 on an annual basis during the study period. More intensive industrial forest harvest occurred in the study area outside the Research Forest boundaries in the 15 years before this study (2000-2015). Although salvage harvest continued, relatively fewer stands were actively harvested in between the two data collection periods (e.g. 2015–2016 to 2020–2022). The study area is within a broader region that is experiencing rapid and widespread harvest of dead and dying lodge pole pine affected by a mountain pine beetle epidemic. The study area is part of a long-term monitoring program investigating the influences of climate and landscape change focused on multi-species detections across the JPRF as well as an adjacent area managed by a major forest company. There has not been any significant trapping in the study area for almost two decades. American marten (Martes americana), Canada lynx, short-tailed weasel (Mustela erminea), American mink (Neogale vison), river otter (Lontra canadensis), fisher, wolverine, coyote, and red fox (Vulpes vulpes) are small- to medium-size carnivores present throughout the study area. American beaver (Castor canadensis), muskrat (Ondatra zibethicus), snowshoe hare, red squirrels, flying squirrels (Glaucomys sabrinus), ruffed grouse (Bonasa umbellus), deer mice (Peromyscus maniculatus), and voles (Clethrionomys gapperi, Myodes spp. and Microtus spp.) are some of the most common prey species throughout the study area. 80 Field Data Collection I deployed sixty-six camera traps (Bushnell Trophy Trail Cameras models 119467 and 11947; Bushnell Outdoor Products, Missouri, USA) on a hexagonal grid (2.5 km apart; 5.41 km 2) from January–March in 2015 (23 Jan–03 Apr) and 2016 (01 Feb–10 Apr) and from April–October (22 Jun–19 Jul; 12 Aug–08 Sep; 22 Sep–19 Oct) in 2016. The total study area was 357 km2. In 2020–2021, trail cameras (Browning Dark Ops HD Pro Trail Cameras model BTC-6HDP; Browning, Utah, USA) were set at the same sites as 2015–2016. Although the same camera sites were monitored continuously from January 2020 to October 2021, I used time periods in which the highest proportion of cameras were active, survey starts coincided with camera check and lure days, and survey timing overlapped with dates in 2015–2016. Camera data used in both 2020 and 2021 included: 01 February–11 April and 24 June–14 October (24 Jun–21 Jul; 05 Aug–01 Sep; 16 Sep–13 Oct). The 2015–2016 and 2020–2021 data sets represented a time of high and low hare abundance, respectively. Although the exact timing of a peak and trough in hare populations was uncertain, my two data sets (2015–2016 and 2020–2021) represented two time periods of contrasting hare abundance. Occurrence rates of snowshoe hares at camera traps decreased 73% between the two winter periods. This trend was supported by a 40% decrease in hare densities measured at pellet plots established 3 years after the estimated hare peak (2018– 2021; John Prince Research Forest, unpublished data). I only included sites in the analyses in which the remote camera was active >50% of the survey period. A total of four cameras were removed from the snow-free high period as well as one camera from the snow-free low period due to camera failure. Although random placements of some sites were in the vicinity of roads or trails, no cameras were directly placed on these habitat features. At each site, a scent post was established 81 2.5–3 m directly in front of a camera trap between 0.5 and 1 m above the ground on a tree. This set-up maintained a consistent height and angle of view to the scent post. Each scent post consisted of a small diameter log (<15 cm) secured with one end above the ground (45 cm) and pointing directly at the camera. A local commercial lure containing beaver castor and catnip oil was placed at the end of the log. A small piece of beaver meat (~5 cm diameter) was hung by wire directly above the end of the log (~60 cm) to serve as an additional attractant. Bait was consumed quickly by most carnivores but continued to serve as an additional lure to encourage animals in the vicinity of the camera trap to move into view. Cameras were checked and lure and bait added every two weeks in the winter and every four weeks in the snow-free months. Only lure was added to sites during snow-free months due to bear activity. In 2015–2016, cameras were set to take 30s of video with a 1s delay between video-recordings. In 2020–2021, cameras were set to take 10s of video with a 1s delay between video-recordings. These schedules allowed for nearly continuous recording of the time an animal was in view. Habitat Covariates The study area had a forest inventory derived from high-density light detection and ranging (LiDAR; 8-10 pulses/m2) data obtained in August and September 2015. Independent covariates were represented by three broad categories that included forest cover and structure, disturbance, and prey abundance (Table 10). Variables representing forest cover and structure from LiDAR data included canopy closure at 3 vertical layers (bottom [0-3 m], mid [3-10 m], and top [>10 m]) and canopy height. Because LiDAR data were measured during the leaf-on season, I used a coarse correction factor for the winter based on empirical data collected at sites using the digital Canopeo Application (www.canopeo.com; Alamo Software Foundation) and a literature search (Davison et al. 2020, Wasser et al. 2013). Canopy cover measurements were taken in 4-cardinal 82 directions at 3m from the camera location and >3m above ground and averaged during the leafon and leaf-off seasons. I applied a correction factor of -25% and -52% change to the leaf-off season for sites with few (26–50%) and a large (51–100%) proportion of deciduous trees, respectively. I used field measurements to assess tree type (binary; conifer leading = >75% conf, mixed/deciduous = <75% conf) and volume of coarse woody debris. Field data for tree type were based on a count of trees (>12.5 cm dbh) within 4 plots (11.28 m at camera location and three 3.99 m plots at the end of 50m transects). Volume of coarse woody debris (>7.5cm dbh) was measured along three 50m transects spaced equally and radiating out from the camera location. I used GIS data to measure the distance of each camera site to riparian areas, forest edge, and road as well as proportion of area (250m radius) containing recent cutblocks (<15 years in age), and edge density. Prey covariates included hare abundance, red squirrel abundance, and grouse abundance. I measured relative prey abundance using camera occurrences. I calculated the occurrence rate per site (# of days with a prey occurrence/active camera survey days) for each prey species and season. 83 Table 10. Variables used in the development of habitat and co-occurrence models (multinomial logistic regression) for Canada lynx (Lynx canadensis), sympatric mesopredators, and prey at remote camera sites in central British Columbia, Canada, 2015-16 and 2020-21. Parameter cover (0-3 m) cover (3-10 m) cover (10+ m) canopy height coarse woody debris conf/decid dist.riparian dist.edge prop. Forest age (<15 yrs) edge density dist.road hare grouse red squirrel Description Average canopy cover 0-3m (LiDAR, 50-m radius) Average canopy cover 3-10m (LiDAR, 50-m radius) Average canopy cover >10m (LiDAR, 50-m radius) Average canopy height (LiDAR, 50-m radius) Volume coarse woody debris (field data; 3, 50-m transects) Count of trees; conifer = >75% conf, mixed/decid = <75% conf Distance to stream and lake edge (m) Distance to forest stand age (m) Proportion of area (250-m radius) with recent cutblocks (<15 yrs) Edge density (250-m radius) Distance to truck driveable road (m) Occurrence rate per site for hare (# days detected/survey days) Occurrence rate per site for grouse (# days detected/survey days) Occurrence rate per site for squirrel (# days detected/survey days) Variable type Continuous Continuous Continuous Continuous Continuous Categorical Continuous Continuous Continuous Continuous Continuous Continuous Continuous Continuous Data Analysis I used multinomial logistic regression to investigate habitat characteristics that influenced the cooccurrence of lynx, sympatric mesopredators (fisher, wolverine, coyote), and their prey (snowshoe hare, red squirrel). I considered the application of occupancy-based co-occurrence models (Mackenzie et al. 2004), but decided that approach was unsuitable given the survey effort and timing (continuous monitoring throughout season of interest), camera spacing, and the use of bait and lure that were designed to provide a high likelihood of detection (Mackenzie and Royle 2005, Tigner et al. 2015). Furthermore, home ranges of all mesopredators in this study were large enough to encompass multiple camera stations violating the assumption of spatial 84 independence for occupancy models (Burton et al. 2015, MacKenzie et al. 2004, Parsons et al. 2019). By using a multinomial model approach, I was able to investigate habitat association and differentiation of lynx relative to other sympatric mesopredators and their prey across all data sets. For the dependent variable in the camera models, I first summed all daily occurrences (independent visit = 24 hour) at a site during each season and biological period (winter low, winter high, snow-free low, snow-free high). I then calculated the occurrence rate (#occurrence days/#operational camera days) for each site. To create a binary variable, I separated lynx occurrences at each site into two categories (high (1) vs no/low use (0)) based on the 50th percentile of the occurrence rate at a site. I used the occurrence rate and 50th percentile for all model sets because of the large number of sites (82%) with lynx occurrences in 2015–2016, to keep analyses consistent between years, and to account for variation in sampling effort between seasons and sites. Occurrence rates of lynx were strongly correlated to site abundance estimates from N-mixture models in my study area (r = 0.88–0.95; Crowley et al. in prep). In the boreal forest of Canada, camera data have also been highly correlated with independent density estimates of snowshoe hares, lynx, and coyotes (Villette et al. 2016, Kenney et al. 2024). By using the 50th percentile, the binary response variable represented a coarse measure of relative abundance (no/low use vs moderate/high use) rather than presence or absence. This approach provided an ecologically plausible response variable likely more representative of common and widespread species. Except for the winter high period, this delineation generally combined sites with no or single lynx occurrences during each time period. For the snow-free high and winter low season, a “0” represented an occurrence rate of <1.2 and <1.4 lynx occurrences/site/day, respectively. For snow-free low, a “0” represented <0.6 lynx occurrences/day. Lastly, for winter 85 high, a “0” equated to < 2.9 occurrences/site/day. For each prey (hare, squirrel), the 50th percentile was also divided into two categories (high (1) vs low use (0)) based on the 50th percentile of the occurrence rate at a site. For all other sympatric carnivores, the 50th percentile reflected a true binary outcome (e.g,, 0 = 0 fisher occurrences/site/day). There were four possible outcomes in each model according to the occurrence of lynx and a competitor or prey–lynx, fisher, wolverine, coyote, hare, red squirrel–at a camera site. For example, in models investigating habitat association between lynx and fisher, the base outcome (0) represented sites with low use by lynx and no fisher. The contrast outcomes included sites with high use by lynx with no fisher (1), sites with low use by lynx and fisher was present (2), and sites with high use by lynx and fisher was present (3; Figure 10). I fit models for all pairs of potential competitors of lynx (i.e., lynx-fisher, lynx-wolverine, and lynx-coyote) as well as the two most common prey species of lynx (lynx-hare, lynx-red squirrel). All two-species models (e.g., lynx-fisher) were fit for two seasons (winter and snow-free) and during two contrasting periods of prey abundance within the hare cycle (hare low and hare high) for a total of four potential model sets. 86 Figure 10. Example model development and outcomes (multinomial logistic regression) investigating the habitat use and co-occurrence of Canada lynx (Lynx canadensis) and sympatric mesopredators (coyote [Canis latrans], fisher [Pekania pennanti], and wolverine [Gulo gulo]) at camera traps during two contrasting periods of prey abundance in central British Columbia, Canada, 2015–2016 (high hare) and 2020–2021 (low hare). 87 I used an Information Theoretic Model Comparison (ITMC) approach to develop a set of 11 multinomial regression models to explain habitat associations and differentiations between lynx and other sympatric mesopredators and prey (Burnham and Anderson 2004; Table 11). I used Akaike’s information criterion for small sample sizes (AICc) to identify the most parsimonious model explaining habitat association and differentiation (Burnham and Anderson 2004). I used both ΔAICc and Akaike weights (AICcw) to rank and compare models. Table 11. A priori candidate models (multinomial logistic regression) representing habitat use and co-occurrence of Canada lynx (Lynx canadensis), sympatric mesopredators, and prey at remote camera sites in central British Columbia, Canada, 2015–2016 and 2020–2021. Model Name Canopy Cover Riparian + Cover Canopy Height + Riparian Canopy Height + Ground Cover Disturbance Disturbance + Edge Edge + Cover Disturbance + Canopy Height Prey- 3 Species Prey- 2 species null Model cover (0–3 m) + cover (3–10 m) + cover (10+ m) + conf/decid dist. riparian + cover (3–10 m) + cover (10+ m) canopy height + dist. riparian + conf/decid canopy height + coarse woody debris + cover (0–3 m) prop. forest age (<15 yrs) + edge density + dist. Road prop. forest age (<15 yrs) + dist. Edge dist. Edge + cover (0–3 m) + cover (3–10 m) + cover (10+ m) canopy height + prop. forest age (<15 yrs) hare + grouse + red squirrel hare + red squirrel no independent covariates K 5 4 4 4 4 3 5 3 4 3 1 I used the receiver operating characteristics and resulting area under the curve (AUC) to assess the predictive ability of the best model (Pearce and Ferrier 2000). I used a onefold cross validation routine to withhold each record sequentially from the model building process and then 88 calculated the independent probability of that withheld record being a species occurrence. I considered a model with an AUC score of 0.7 to 0.9 to be a useful application and a model with a score >0.9 as highly accurate (Boyce et al. 2002). I used the AUC scores to compare the relative predictive ability of the three outcomes for each 2-species model set. I used 95% confidence intervals to assess the strength of effect of each predictor covariate on the dependent variable. Poor power and inconclusive statistical inference is expected from covariates with confidence intervals that approach or overlap 0. I used tolerance scores to assess variables within each model for excessive collinearity (Menard 2001). All data analyses were performed using Stata (version 17.0; Statacorp, College Station, Texas). Results Camera Trap Occurrences In 2015–2016, cameras functioned properly an average of 96.0% (SE = 0.9; 8,866 camera-days) and 90.3% (SE = 2.4; 5,008 camera-days) of potential camera days in the winter and snow-free periods, respectively. In 2020–2021, cameras functioned properly an average of 96.8% of potential camera days in the winter (SE = 0.7; 8,947 camera-days) and 91.1% (SE = 1.4; 10,101 camera-days) of potential camera days in the snow-free periods. There was a 76.2% and 65.9% decrease in lynx occurrence rates between 2015–2016 and 2020–2021 during the winter and snow-free seasons, respectively (Table 12; Figure 11). There was a similar steep decrease in snowshoe hares (72.7% = winter, 79.0% = snow-free). Both fisher and wolverine occurrence rates increased from 2015–2016 to 2020–2021 during the winter and snow-free periods. Coyote occurrences were similar between the hare abundance periods in the winter, but decreased from 2015–2016 to 2020–2021 during the snow-free period. Red 89 squirrels increased from 2015–2016 to 2020–2021 during both seasons (winter = 42.3%, snowfree = 83.0%). In general, the probability of co-occurrence of lynx and other mesopredators increased with more mid-strata and less top-strata cover (Figure 12). Lynx were strongly associated with hares and these cover characteristics during all time periods. This relationship was most pronounced in winter for wolverine-lynx and fisher-lynx during the hare low, and for coyote-lynx during snow-free periods. For differences in AICc scores and weights, null models ranked low (9 to 11 of 11 models) for all species and time periods (ΔAICc >14.6, AICcw = <0.001). Table 12. Total occurrences and occurrences per 100 camera-days (rate) for sympatric mesopredators and prey at camera traps during two contrasting periods of prey abundance in central British Columbia, Canada, 2015–2016 (high) and 2020–2021 (low). 2015–2016 (Hare High) 2020–2021 (Hare Low) Species Lynx Wolverine Fisher Coyote Winter Total Rate 732 8.26 15 0.17 2 0.02 26 0.29 Snow-free Total Rate 159 3.17 0 0 0 0 27 0.54 Winter Total Rate 176 1.97 95 1.06 52 0.58 22 0.25 Snow-free Total Rate 109 1.08 8 0.08 22 0.22 12 0.12 Hare Squirrel 708 1804 432 1302 195 2591 183 4807 7.99 20.35 8.63 26.00 2.18 28.96 1.81 47.59 90 1.2 9 8 1 7 6 5 0.6 4 0.4 3 2 0.2 1 0 0 HIGH LOW Cyclic hare abundance – Winter (a) 0.6 10 9 0.5 8 7 0.4 6 0.3 5 4 0.2 Occurrence/100 days (lynx, hare) Occurrence/100 days (fisher, wolverine, coyote) 0.8 3 2 0.1 1 0 0 HIGH LOW Cyclic hare abundance – Snow-free (b) WOLVERINE FISHER COYOTE LYNX HARE Figure 11. Occurrences per 100 camera-days for sympatric mesopredators and prey at camera traps during two contrasting periods of prey abundance in central British Columbia, Canada, 2015–2016 (high hare) and 2020–2021 (low hare). Top = Winter (a); Bottom = Snow-free (b). 91 2015–2016 Winter Models In general, the canopy cover models ranked above disturbance and prey abundance models for the 2015–2016 winter season. There was a clear top model for all species except for fisher in the winter (AICcw > 0.833; Table 13). I was unable to run models for fisher with only two total occurrences (one in each year) during this survey period. The model including all three canopy cover strata and percent conifer was the highest ranked during the 2015–2016 winter for all other species except for snowshoe hare. For lynx-coyote models, lynx high use was not associated with the occurrence of coyotes, but had outcomes with useful predictive accuracy at sites with low use by lynx and no coyotes (AUC > 0.77). Lynx high use was not associated with the occurrence of wolverine. At sites with lynx and hare, hares selected for sites with greater canopy cover (3– 10m), but differentiated from lynx by being positively associated with sites further from riparian edge (Table 14). 2015–2016 Snow-free Models For the snow-free period in 2015–2016, I could only run lynx-hare, lynx-squirrel, and lynxcoyote models because fisher and wolverine did not occur at any sites (Table 13). Lynx were not strongly associated with the occurrence of red squirrels during this period. Two models for coyote-lynx–disturbance and cover–accounted for 95% of the AICc weight (ΔAICc < 4.0). For the disturbance model, only sites with coyotes (low lynx use) had useful predictive accuracy. Coyotes were associated with further distances from truck roads, lower edge density, and higher amounts of recent disturbance. The cover model was predictive of sites where high use by lynx was associated with the occurrence of coyotes (AUC = 0.78, SE = 0.09). When lynx and coyotes 92 occurred together, both species selected for sites that were closer to riparian habitat with more mid-level cover and less cover above 10 meters (Table 14). 2020–2021 Winter Models In winter 2020–2021, similar to 2015–2016, cover models ranked higher than disturbance and prey abundance models in winter (Table 13). In contrast to 2015–2016, however, the highest ranked model for all species contained covariates for distance to riparian edge and the mid- and top-strata canopy cover. Lynx occurrence was strongly associated with hare or squirrel occurrence (AUC > 0.9). In all winter 2020–2021 models, lynx were positively associated with mid-strata cover (3–10m) and closer distances to riparian edge, but negatively associated with top-strata cover (10m +) (Table 14). Except for hare, all other models regardless of species or multinomial outcome were positively associated with closer distances to riparian edge. Although there was some model uncertainty for lynx-wolverine and lynx-fisher models, sites with high use by lynx were associated with the occurrence of both species. Lynx, fisher, and wolverine selected for sites with greater mid-strata cover and less top-strata cover. Wolverine also selected for sites closer to riparian edge, fully mirroring lynx high use sites. Lynx high use was not associated with coyotes. 2020–2021 Snow-free Models The first and second ranked models for the 2020–2021 snow-free season contained either edge distance or riparian edge distance in combination with cover covariates (Table 13). Similar to all other time periods, lynx and hare occurrence were strongly associated. Lynx high use was not associated with fisher, but positively associated with coyote occurrence (AUC = 0.75, SE = 0.14). Similar to winter 2020-2021, lynx high use sites were associated with the occurrence of 93 wolverine. In 2-species models, lynx, wolverine, hare, coyote, and squirrel selected for greater mid-strata cover and less top-strata cover (Table 14). Table 13. AICc scores, and AICc weights (w) for multinomial logistic regression models representing habitat use and co-occurrence of Canada lynx (Lynx canadensis), sympatric mesopredators, and prey at remote camera sites in central British Columbia, Canada, 2015–2016 and 2020–2021. Area under the curve (AUC) and standard error (SE) for the receiver operating characteristic represents the predictive accuracy of each model. Shaded value = AUC > 0.7. HARE LOW WINTER Model COYOTE–LYNX Riparian + Cover WOLVERINE–LYNX Riparian + Cover Edge + Cover Canopy Cover FISHER–LYNX K ΔAICc w AUC1 (SE) AUC2 (SE) AUC3 (SE) 4 0.0 0.961 0.88 (0.05) 0.27 (0.09) 0.51 (0.18) 4 5 5 0.0 2.3 2.4 0.621 0.192 0.182 0.59 (0.10) 0.64 (0.09) 0.67 (0.10) 0.20 (0.08) 0.41 (0.10) 0.41 (0.10) 0.90 (0.05) 0.84 (0.07) 0.82 (0.08) Riparian + Cover 4 4 5 4 5 0.0 0.9 2.3 2.6 2.9 0.406 0.255 0.128 0.109 0.096 0.74 (0.08) 0.68 (0.09) 0.71 (0.08) 0.75 (0.08) 0.66 (0.08) 0.27 (0.08) 0.62 (0.10) 0.44 (0.10) 0.45 (0.10) 0.46 (0.11) 0.87 (0.07) 0.74 (0.09) 0.78 (0.09) 0.83 (0.07) 0.76 (0.10) 4 4 0.0 5.4 0.874 0.060 0.57 (0.10) 0.69 (0.10) 0.55 (0.11) 0.60 (0.10) 0.9 (0.05) 0.87 (0.06) 4 0.0 0.961 0.74 (0.09) 0.57 (0.10) 0.95 (0.04) K ΔAICc w AUC1 (SE) AUC2 (SE) AUC3 (SE) 5 0.0 0.939 0.77 (0.07) 0.39 (0.12) 0.63 (0.11) 5 0.0 0.833 0.82 (0.06) 0.2 (0.20) 0.22 (0.11) Canopy Height + Gr. Cover Canopy Cover Canopy Height + Riparian Edge + Cover HARE–LYNX Riparian + Cover Canopy Height + Riparian RED SQUIRREL–LYNX Riparian + Cover HARE HIGH WINTER Model COYOTE–LYNX Canopy Cover WOLVERINE–LYNX Canopy Cover 94 Table 13 (continued) Edge + Cover HARE–LYNX Riparian + Cover RED SQUIRREL–LYNX Canopy Cover 5 3.6 0.138 0.79 (0.06) 0.43 (0.22) 0.16 (0.08) 4 0.0 0.956 0.28 (0.09) 0.80 (0.08) 0.82 (0.07) 5 0.0 0.966 0.62 (0.10) 0.36 (0.10) 0.86 (0.07) K ΔAICc w AUC1 (SE) AUC2 (SE) AUC3 (SE) 5 0.0 0.97 0.68 (0.07) 0.44 (0.18) 0.75 (0.14) 4 5 0.0 2.8 0.719 0.181 0.71 (.07) 0.67 (0.07) 0.61 (0.15) 0.23 (0.09) 0.73 (0.11) 0.65 (0.15) 5 4 5 0.0 0.8 1.6 0.451 0.310 0.201 0.78 (0.07) 0.81 (0.06) 0.77 (0.07) 0.24 (0.12) 0.28 (0.09) 0.33 (0.12) 0.48 (0.10) 0.44 (0.10) 0.37 (0.10) 4 5 0.0 2.4 0.703 0.205 0.52 (0.10) 0.37 (0.10) 0.44 (0.11) 0.47 (0.12) 0.81 (0.07) 0.76 (0.07) 5 4 0.0 1.8 0.620 0.253 0.66 (0.10) 0.64 (0.10) 0.46 (0.10) 0.40 (0.10) 0.69 (0.09) 0.76 (0.08) K ΔAICc w AUC1 (SE) AUC2 (SE) AUC3 (SE) 4 4 0.0 4.0 0.827 0.113 0.59 (0.09) 0.36 (0.09) 0.73 (0.10) 0.23 (0.11) 0.59 (0.11) 0.78 (0.09) 5 0.0 0.999 0.65 (0.11) 0.59 (0.12) 0.76 (0.08) 4 0.0 0.967 0.40 (0.11) 0.73 (0.10) 0.69 (0.09) HARE LOW SNOW-FREE Model COYOTE–LYNX Edge + Cover WOLVERINE–LYNX Riparian + Cover Edge + Cover FISHER–LYNX Edge + Cover Riparian + Cover Canopy Cover HARE–LYNX Riparian + Cover Edge + Cover RED SQUIRREL–LYNX Edge + Cover Riparian + Cover HARE HIGH SNOW-FREE Model COYOTE–LYNX Disturbance Riparian + Cover HARE–LYNX Edge + Cover RED SQUIRREL–LYNX Disturbance 95 Table 14. Coefficients for top-ranked models illustrating habitat use and co-occurrence by Canada lynx (Lynx canadensis), sympatric mesopredators, and prey at camera sites during two contrasting periods of prey abundance in central British Columbia, Canada, 2015–2016 (high) and 2020–2021 (low). Area under the curve (AUC) for the receiver operating characteristic represents the predictive accuracy of each model. Dark grey = negative association, Light gray = positive association, “●” = significant coefficient, “X” = useful or high model accuracy. Coyote Coyote–Lynx Lynx Wolverine Wolverine–lynx Lynx Fisher Fisher–lynx Lynx Hare ● Hare–lynx Lynx Squirrel Squirrel–lynx ● ● ● X X ● ● ● ● X X ● ● ● ● ● ● ● ● ● X ● ● ● ● ● X ● ● X** ● ● ● ● ● ● ● X X X cover (10+ m) AUC > 0.7 ● ● * ● ● ● ● ● X ● ● ● cover (0–3 m) cover (3–10 m) HARE LOW AUC > 0.7 dist_riparian dist_edge edge_density dist_roads cover (3–10 m) cover (10+ m) AGE < 15 AUC > 0.7 X SNOW-OFF HARE HIGH dist_riparian dist_edge cover (0–3 m) cover (3–10 m) cover (10+ m) ● AUC > 0.7 dist_riparian ● X ● ● ● cover (10+ m) conifer Model outcome Lynx dist_riparian cover (0–3 m) cover (3–10 m) WINTER HARE HIGH HARE LOW ● ● ● ● ● X ● ● X ● ● ● X ● ● X X ● ● ● X ● ● X ● ● ● ● X 2 model ouputs:*disturbance model, **cover model 96 Figure 12. Probability of lynx (Lynx canadensis) and wolverine (Gulo gulo) co-occurrence and lynx and fisher (Pekania pennati) co-occurrence, with 95% confidence intervals, as a function of canopy cover (3–10 m and >10 m) at cameras sites during a high and low in snowshoe hare abundance in central British Columbia, Canada, February–April, 2015–2016 and 2020–2021. 97 Discussion This is the first study to document changes in habitat overlap and co-occurrence between Canada lynx and sympatric mustelid species during the snowshoe hare cycle. A significant change in the mesopredator community occurred between two time periods separated by only four years. Lynx occurrences mirrored the decrease in hares, while the number of sympatric carnivore species and the combined occurrences of these species increased during the low in hare abundance. Overlap in habitats used by lynx, wolverine, and fisher increased during a low in hare abundance. Consistent with my prediction, habitat overlap increased at a time of prey scarcity. Conversely, coyote occurrences decreased from the high to low in hare abundance during the snow-free period. Unlike the mustelids, interspecific overlap in habitat used by lynx and coyote was greatest during the snow-free seasons in all years. Cover models were the most important for all time periods. Cover models were the most important for all time periods. The importance of cover for mesocarnivores and their prey is well documented (Feldhamer et al. 2003), and was a clear driver of habitat use in this study. Prey models consistently ranked lower than cover models, but hares were often a positive and significant influence on the use of sites by lynx. Although disturbance models ranked low and decreases in cover could also be related to forest harvest, disturbance was not as important as cover at the spatial scale of my camera grid and variables. A key difference between the hare low and high periods in winter was the importance of edge distance, especially riparian, during the low in hare abundance. Riparian edges can be positively associated with species diversity and abundance including small mammals (Hamilton et al. 2015, Larsen-Gray and Loehle 2022, Perault and Lomolino 2000). Riparian areas likely provide a dual function for mesopredators, providing not only hunting opportunities, but also 98 serving as travel corridors that provide cover from sympatric competitors/predators. Although disturbance models did not rank high, my results have implications for increased disturbance on the landscape. Following from regulatory requirements, riparian corridors can often be the only remnant forest left behind in areas of extensive timber harvest. If riparian habitats with concentrated mesopredator activity are more limited or become the only available cover then overlap and competition could increase. Mid-level and top-level cover were important predictors of where lynx and sympatric carnivores co-occurred. Ground level forest cover and shrub vegetation (0–3) were not included or significant covariates in most top models. This could be the result of an imprecise correction factor for the LiDAR data that were collected during the snow-free season. However, canopy cover (0–3) also did not play a strong role in habitat use during the snow-free season. Although canopy cover (0–3) had a lesser role in habitat use in my study, it was a significant covariate in several lower-ranked models. This suggests that ground cover also played a role, but to a lesser degree than canopy cover at the two upper strata. Past studies of lynx and hare did not have accurate cover data at multiple strata, and often used one coarser measurement of upper canopy cover (>3m). Differences in the direction of influence of the two separate upper strata (3–10m, >10m) in this study would not have been apparent, and their importance to habitat use studies may have been underestimated. Hare abundance was the only major ecological condition that changed between time periods. There was relatively little forest harvesting and no fire activity in or adjacent to the study area during the time of data collection. Also, the study area has not had any significant trapping for almost two decades. Deep snow should give lynx a competitive advantage over other carnivores (except wolverine) and there was a difference in snow depth in February/March 99 (Fort St James, B.C.; https://climate.weather.gc.ca/historical_data) between 2015–2016 (‫= ̅ݔ‬ 23.1cm, SE = 1.3) and 2020–2021 (‫ = ̅ݔ‬35.5cm, SE = 1.3). However, snow was deeper during the hare low when there were less lynx and more sympatric carnivores and is an unlikely explanatory factor for habitat overlap in my study. The potential influence of bait on movement patterns is an important consideration when designing, implementing, and interpreting wildlife field studies. A study of fisher, however, found that any effects of bait on animal movements were eclipsed by habitat heterogeneity (Stewart et al. 2019), and that bait may increase detection probability improving ecological inferences. In another analysis in my study area, I found that time since bait and lure were added to a site was not a significant influence on the detection probability of lynx (Chapter 3). Lastly, bait was very small, consumed quickly by most carnivores, and often not present at sites for long periods. For this reason, bait primarily served as an additional scent lure before and after consumption that encouraged animals already in the vicinity of the site to move into camera view. Short-term fluctuations in prey abundance and scarcity may drive short-term fluctuations in habitat overlap and potential niche expansion and competitive interactions. Consistent with optimal foraging theory (i.e., niche expansion during prey scarcity; Emlen, 1968, MacArthur and Pianka, 1966) and with short-term fluctuations in prey abundance (Wiens 1977, 1993), I observed differences in the habitat use and overlap of sympatric carnivores between the two hare abundance periods. Although I was not able to measure competition as it might relate to diel variation in space use or differences in diet, habitat overlap is one key element in assessing the potential for niche overlap and competitive interactions (Murray et al. 2023). The inclusion of temporal variation in resource availability is another important component of investigations of 100 niche overlap (Murray et al. 2023) that was part of my study. Changes in habitat overlap between lynx and other mesopredators was likely influenced by temporal differences in hare abundance. Short-term cycles may not only drive fluctuations in habitat overlap, but also the identity and roles of dominant and submissive species. Extreme changes over short durations in the biomass and composition of the prey community will provide varying benefits to different predator species. A competitive advantage during one stage of a cycle may not be as beneficial during another. My research reveals two important potential outcomes for lynx and competitive mesopredators. During the hare high period, lynx were the numerically dominant species on the landscape. Canada lynx are morphologically adapted for living in cold climates with deep snow (thick fur, long legs, large and well-furred feet for low foot loading) (Anderson and Lovallo, 2003). Lynx had a numerical advantage because of their specialized ability to use the most abundant food source (i.e., hares). Their ability to hunt hares in deep snow provided an advantage over conspecifics as an exploitative competitor (Peers et al. 2020). During the hare low period, the specialized ability to hunt hares and the numerical advantage of lynx was diminished. Data from camera traps and hare pellet plots showed a significant decrease in the snowshoe hare population between time periods. Additionally, both camera traps and lynx captures revealed that lynx were in poor body condition and without kittens during the low (John Prince Research Forest, Unpub. Data). During this time, generalist predators may have both an interference and exploitative competitive advantage over lynx. Generalist mesopredators may derive some benefits from an increase in the availability of non-hare prey. During the hare low, reduced exploitative competition as well as the ability to hunt other prey resources may have increased the distribution and abundance of mustelids and led to increased co-occurrence with lynx. Unlike the mustelids, overlap in habitat use between 101 lynx and coyotes occurred in both snow-free seasons regardless of hare abundance. Coyote and snowshoe hare in the boreal forest often follow a similar pattern of abundance (O’Donoghue et al. 2001, Tyson et al. 2010), that was consistent with my observations of coyote during the snowfree season. Habitat overlap and potential competition with coyotes may increase during the summer when lynx lose their hunting advantage in snow. In contrast, coyote occurrences at camera sites during the winter were similar between time periods. In the boreal forest of Yukon, O’Donoghue et al. (1998b) found that coyotes switched to hunting voles in years with a reduction in the abundance of hares and increased numbers of small mammals. Prey switching by coyotes may partially explain the similar patterns of occurrence between 2015–2016 and 2020–2021 when I observed relatively fewer lynx and hare during the winter. There are several proposed mechanisms to explain the cycling dynamics of lynx and hare, including climate (Yan et al. 2013), weather (Krebs et al. 2014), forest succession (Krebs et al. 2014), food availability and quality (Krebs et al. 1986, Sinclair et al. 1988, Krebs et al. 2017), and predation (Tyson et al. 2010, Krebs et al. 2014, Krebs et al. 2017). Although many of these factors may work synergistically, predation is likely the most important driver of the hare-lynx cycle (Krebs et al. 2017). The pattern and scale of the hare cycle has long been a function of large, undisturbed, and contiguous forests and it is unclear how a fragmented landscape, like in many parts of central BC, may affect the cyclic dynamics and interactions of hare, lynx, and other carnivores in the long-term. My research suggests that habitat overlap among conspecifics in disturbed landscapes could play a role in the persistence of this cyclic dynamic. The potential influence of competing predators on lynx populations becomes especially relevant given the cumulative effects of landscape disturbance and climate change (Scully et al. 2018). Accumulated snow cover over most of Canada has decreased over the last several decades 102 and is projected to follow that trend in the future (Bush and Lemmen 2019). Decreases in snow may lessen the competitive advantage lynx have over other predators potentially resulting in niche displacement (Buskirk et al. 2000, Peers et al. 2013, Scully et al. 2018). Besides being generalists and likely gaining some competitive advantage during hare scarcity, species such as fisher and coyote will also benefit from reduced snowfall (Murray and Boutin 1991, Krohn et al. 1995, Pozzanghera et al. 2016, Peers et al. 2020, Pauli et al. 2022). Coyotes have gone through an extensive range expansion in the north over many decades (Hody and Kays 2018). Fisher populations also have expanded their range likely due to reduced snowfall and increased forest harvesting where they often outcompete marten populations (Krohn et al. 1995, Jung and Slough 2011, Suffice et al. 2020, Kupferman et al. 2021, Pauli et al. 2022). Bobcats (Lynx rufus) are another generalist predator not in my study area, but that are expanding northward in other parts of North America (Roberts and Crimmins 2010) and may have a competitive advantage over lynx in areas with less snow cover (Peers et al. 2012,2013). The existing and future novel mesopredators likely have an interference and exploitative advantage over lynx during hare lows or in areas of recent forest disturbance. Except for possibly wolverine, lynx also lose much of their competitive advantage in years or areas with lesser snow cover. The current state of cumulative forest change and projected future conditions may be detrimental to lynx populations, but beneficial to many of its sympatric competitors. However, the scale and pace of environmental change and its effects on natural cycles and community interactions is unclear and requires additional long-term study. Wiens (1977, 1993) suggested that unless populations are in a resource-defined equilibrium, short-term studies representative of most grant or thesis projects will provide only snapshots in time that may be difficult to interpret. My data spans a 7-year period and represents 103 contrasting environmental conditions. Nonetheless, there is uncertainty in the mechanisms underlying the observed patterns of lynx and their competitors. Clearly, longer term monitoring is required as has been achieved in a small number of other study areas (Einoder et al. 2018, Krebs et al. 2001, 2023; Lindenmayer et al. 2022, Kenney et al. 2024). Extreme changes in my mesopredator community occurred over a very short time period, thus, a frequent monitoring interval is required. Without a basic understanding of competition among sympatric carnivores, we cannot begin to address broader scale questions regarding the influence of climate change, forest disturbance, and mesopredator persistence on the landscape. 104 Chapter 5: Study Findings, Management Implications, and Recommendations for Future Research Summary of Results In Chapter 2, I compared the habitat selection of GPS-collared lynx and American marten at two behavioural scales. Also, I compared differences in habitat selection for the two species measured using GPS data and camera images. I found that habitat use measured using camera traps, in general, was similar to the habitat use of GPS-collared lynx and marten. Mid-level and top-level vegetation cover were important predictors of habitat use for both marten and lynx, but with opposite directional influences. Lynx selected for more mid-level cover and less top-level canopy cover, while the inverse relationship was found for marten. Lynx and marten demonstrated differential use of habitat defined by forest age and structure suggesting that each species would serve as a unique indicator of forest condition and change. For Canada lynx, the direction and significance of habitat covariates were nearly identical using camera trap and GPScollar data and consistent between survey periods with differences in the abundance of their primary prey species, snowshoe hare. My data suggested that camera traps can be a reliable method for measuring habitat relationships of lynx and marten. I found that lynx behaviours and relative abundance were correlated between years and hare abundance periods (Chapter 3). Consistent with my predictions, years with higher lynx and hare abundance were characterized by increases in cheek-rubbing, scent-marking, and grouping behaviours. These behaviours proved to be good indicators of cyclic fluctuations in lynx and hare abundance. Measures of abundance and behaviours provided insights into the ecological processes influencing hare and lynx population change. 105 In Chapter 4, lynx occurrences mirrored the decrease in hares that I observed during the 2020–2021 monitoring period, while the occurrences of sympatric fisher and wolverine species increased during that period. I found that the co-occurrence of lynx with other sympatric carnivores increased at a time of prey scarcity suggesting predator populations in subboreal forests may be in a dynamic state of habitat overlap dependent on cyclic abundance of snowshoe hare. Ecological Implications My research considered a broad range of ecological relationships that were focused on the spatial and temporal variation in the habitat, behaviour, and abundance of lynx. That variation included a rapid decrease in the abundance of the primary prey of lynx, snowshoe hare. Despite that variation, I observed some consistent responses of lynx to components of the subboreal forest. In particular, vegetation cover was a strong and consistent factor that explained habitat use, carnivore co-occurrence, abundance, and behaviours. Specifically, the co-occurrence of lynx with other mesopredators, habitat selection measured with GPS collars and camera traps, and abundance estimates were explained by mid- and top-strata cover. Abundance, GPS-collar locations, and cheek-rubbing behaviours were also positively associated with greater vegetative ground or low cover. The accuracy of LiDAR-derived cover measures relative to coarser VRI data likely aided in revealing these relationships. Past studies have found that ground cover is an important predictor of lynx habitat (Adams 1959, Brocke 1975, Wolff 1980, Wolfe et al. 1982, Litvaitis et al. 1985, Homyack et al. 2007). Ground cover was important in my study, but midlevel cover and upper canopy cover were also associated with lynx habitat. Past studies of lynx and hare did not have accurate cover data at multiple strata, and often used one coarser measurement of upper canopy cover (>3m). Differences in the direction of influence of the two 106 separate upper strata (3–10m, >10m) in this study would not have been apparent, and their importance to habitat use studies may have been underestimated. Lynx were positively associated with areas closer to riparian features in several analyses of my dissertation. Lynx co-occurrence with sympatric carnivores increased in areas closer to riparian edge during the low in hare abundance. There can be both positive and negative effects of edge habitat. Species diversity has been positively associated with habitat edges, while increases in nest predation and barriers to dispersal are potential negative effects (Yahner 1988, Lidicker Jr. 1999, Kremsater and Bunnell 1999, and Baldi 2004, Hamilton et al. 2015, Willmer et al. 2022). Riparian zones, in particular, can be positively associated with species diversity, and serve as movement corridors for wildlife (Bunnell and Dupuis 1993, Perault and Lomolino 2000, Hamilton et al. 2015, Larsen-Gray and Loehle 2022). Riparian edge may be important to mesopredators in my study area, particularly during times of prey scarcity. Greater prey abundance and diversity relative to nearby non-riparian habitat may provide more hunting opportunities. Also, riparian areas likely have a dual function for mesopredators, providing not only foraging habitat, but also serving as travel corridors between other habitats that provides cover from sympatric competitors, predators, and environmental conditions. Lynx increase movement rates during hare lows potentially increasing the use of riparian corridors for both foraging and travel (Nellis and Keith 1968, Brand et al. 1976, Wards and Krebs 1985, Poole 1994). The habitat ecology of lynx, and potential competitors, were strongly related to the temporal and spatial variation in the abundance of snowshoe hare. My study included two contrasting periods of hare abundance, providing the opportunity to investigate the interaction between prey abundance and the habitat selection, community dynamics, and survey methods for 107 lynx. I found that hare abundance influenced the abundance of lynx, co-occurrence with competitive mesopredators, and the efficacy of survey methods. The absence of hares available to carnivores likely created a ripple effect throughout the entire community. Increases in fisher and wolverine between the high and low in hare abundance, were paralleled by decreases in marten, lynx, and hare. My results suggest that the carnivore community in subboreal forests may be in a dynamic state of habitat overlap dependent on cyclic prey and predator abundance. These changes in ecological conditions can strongly influence how we monitor this community. Behavioral research can help explain population and community models as well as identify proximate mechanisms underlying behavioural responses (Bro-Jorgensen et al. 2019). Similarly, variation in individual behaviour can influence the precision or even bias the results of population estimates. For example, Crowley et al. (2012) found that movement behaviours and track-sign heterogeneity among individual river otters could bias surveys used to assess and monitor changes in population distribution and abundance. My research provides new insights on the relationship between behaviour of Canada lynx and the design and interpretation of studies focused on documenting habitat use and abundance. Surveys were influenced by behaviours including movement, habitat choice, and cheek-rubbing. My research supports the pairing of behavioural responses with other monitoring efforts to provide additional insights into factors influencing population and community trends. This approach is critical to the interpretation of population-level surveys and will ultimately improve the conservation and management of wildlife populations. 108 Landscape Change and Long-term Monitoring My results highlight the need for long-term monitoring of wildlife populations and their habitat. Such monitoring is especially important when resources are of concern or have high social or economic value, as part of a legal mandate or judicial decision, or in reaction to a crisis (McComb et al. 2010). When wildlife monitoring is implemented as a reaction to a crisis, we often do not have “before” data which limits our ability to understand and interpret population changes as well as predict future conditions. McComb et al. (2010) state that a rigorous, unbiased monitoring program is needed to determine if a population is changing and to inform management decisions. Only through long-term monitoring can we understand long-term dynamics that are a product of cyclic behaviour. A typical 2–3-year research project could produce very different results and management recommendations, depending on the phase of the cycle that was studied. These differences could be caused by ecological changes as well as their effects on the efficacy of survey methods. The lynx-snowshoe hare cycle is a keystone relationship in northern forests. In this case, a species/relationship is considered keystone if removal of a species or fundamental change in the relationship would disproportionately affect the broader ecosystem dynamic (Caro 2010). Continued long-term monitoring is critical to understanding the persistence of this relationship across disturbed landscapes. At the very least, short-term studies need to be placed in the context of regional hare populations. For example, habitat selection, movement dynamics, and competitive interactions of lynx may differ with varying density of snowshoe hare. Survey methods that are successful during high population densities may differ from those during population lows. Without this knowledge, data could be misinterpreted and result in biased or incomplete management recommendations and practices. 109 Indicator species are used to measure the status and conditions of ecosystems (Caro 2010). Marten is often recommended as a management indicator and umbrella species for mature and old growth forest conservation and monitoring initiatives (Hepinstall and Harrison 2001, Mortelliti et al. 2022, Woollard et al. 2024). The close association among lynx, hare, and lateregenerating forests also holds promise for the use of lynx as an indicator and umbrella species of younger forest types. My research has demonstrated that marten and lynx are sensitive to forest cover and age. Those relationships support the suitability of these two mesopredators as co-indicators of forest condition and change. Maintaining sufficient habitat for marten and lynx on the same landscape would require a mosaic of stands with varying cover likely beneficial to many other wildlife species. Canada lynx may be particularly suited as an indicator species of environmental change because of their suspected sensitivity to variation in climate (King et al. 2020). Lynx is a specialist predator of snowshoe hare and is uniquely adapted to hunting prey in deep snow. Accumulated snow cover over most of Canada has decreased over the last several decades and is projected to follow that trend in the future (Bush and Lemmen 2019). Decreases in snowfall may lessen the competitive advantage lynx have over other predators (Buskirk 2000, Peers et al. 2013). Monitoring changes in lynx populations across a latitudinal gradient may provide an indicator of how environmental change and community dynamics of this pan-North American predator-prey system is affected by climate change. Strengths, Weaknesses, and Future Research A clear strength of my research was the combined availability and use of individual movement (GPS collars), non-invasive survey (camera trap and hair snare), and fine-scale habitat (LiDAR) 110 data. Comparable data from GPS-collars and non-invasive surveys often are not available for the same land base and time period. LiDAR provided habitat data that have not been available for lynx studies in the past. The combined data sets provided novel insights into the ecological and behavioural processes influencing the habitat ecology of lynx. My research also benefited from a longer-term data set that spanned different cyclic periods of lynx and hare abundance. My research incorporated these differences in abundance, and provided additional insights into how ecological conditions influence lynx habitat use, carnivore co-occurrence, and survey methods. The annual sample size of GPS-collared lynx in my study was small. Although 17 lynx were used in my analyses (Chapter 2), lynx capture spanned several years with only 4–7 lynx monitored in each year. Low densities of lynx in the study area limited capture success and sample size. Although my annual sample size was small, density estimates produced from SECR models (Chapter 3), suggested that approximately 50% of the lynx population were outfitted with GPS collars during each year of the study. Raw detection data corroborate this estimate with collared lynx representing 49% and 45% of all lynx occurrences at camera traps in 2020 and 2022, respectively. Data from GPS collars on lynx, however, represented a period of low hare abundance only and it is unclear how mark-resight and N-mixture estimates would compare during a hare high. If there is 4-fold difference in density between low and high periods as has been documented in Alberta (Keith et al. 1977), my SCMR density estimate would extrapolate to 12 lynx/100 km2 during a hare high. Although reasonable, extreme variation in the amplitude of cycles within the same region or between regions make this estimate difficult to assess for our study area. The use of LiDAR to measure fine-scale habitat characteristics was a clear benefit to my study. However, LiDAR data are costly to acquire and process, limiting the overall availability 111 of these data. I was unable to use location data from several collared lynx that ranged beyond the LiDAR area. In addition, predictive habitat mapping beyond the boundaries of my study area was not possible. Further research needs to connect LiDAR based metrics to past and current harvest practices. An understanding of this relationship can help predict future habitat conditions and inform best management practices for maintaining forest structure required for lynx and other forest carnivores. Each of my chapters provided direction for future research. In Chapter 2, I highlighted the need to investigate the influences of movement behaviour on point surveys for wildlife species. It is unclear if different types of point surveys can provide similar assessments of habitat use when compared to individual-based movement data. This could be investigated by pairing GPS-collars or backtracking studies with camera trap or hair snare surveys. Finer-scale GPS fix rates (i.e., 10 minutes to 1 hour) could also provide more detailed assessments of sinuosity and associated behaviours (i.e., resting, hunting, traveling). Backtracking during the winter also provides this information as well as specific behaviors such as hunting, prey chases and kills, scent-marking, and resting beds (Parker et al. 1983, O’Donoghue et al 1998a). In Chapter 3, I did not have sufficient data to generate mark-resight estimates of lynx abundance during a high in hare abundance. Although I found similar patterns of habitat selection using both GPS collars and camera trap data, GPS collars deployed during a hare high could provide additional insights into the habitat ecology of lynx and the efficacy of N-mixture models. In addition, the influence of disturbance on lynx abundance was difficult to assess at the spatial scale of my study. The influence of regional forest disturbance on cyclic fluctuations needs to be assessed across a much larger area (i.e., Northern BC). Long-term monitoring of multiple camera grids across varying levels of disturbance would be a first step in addressing that 112 knowledge gap. Although this would require considerable effort, there is an opportunity for cross-jurisdictional collaboration in a study of this type. For Chapter 4, future research should include data on carnivore diet to assess the full range of potential competitive interactions (spatial, temporal, diet; Murray et al. 2023). Although I had estimates of prey availability, diet data collected across time periods of varying prey availability could provide additional insights into competitive interactions within the mesopredator community. Management and Conservation Late-regenerating forests are important to hare and lynx populations (Mowat et al. 2000, Hodges et al. 2000a, b, Anderson et al. 2003, Murray et al. 2003). Greater ground- and mid-level cover, often a characteristic of late regenerating stands (20–35 years old), were an important predictor of lynx habitat in my study. Representation of late-regenerating stands in a mosaic of multi-age forest is likely critical to maintaining hare populations and the cyclicity of their populations. The biomass represented by hares is important to a variety of other species that goes beyond the lynx-hare relationship. Representation and maintenance of these older regenerating stands should be an important component of forest and landscape management planning. In addition, cover and structure were not only key predictors of lynx, but also the habitat use of marten, wolverine, fisher, and coyote. My results suggest that mesopredator communities in subboreal forests are dependent on landscapes that contain a mosaic of stand types of various ages that represent vegetation cover at multiple strata (Holbrook et al. 2019). Large areas of even-aged forest will likely limit species diversity. Harvest practices that retain stand cover or maintain connectivity corridors with cover will benefit a variety of mesopredator species. 113 The importance of riparian habitat to fish and other aquatic or semi-aquatic wildlife is well known. However, the integrity of riparian systems is also important to lynx and other terrestrial carnivore species. My results provide some insights on the ecological effects of increased forest disturbance at landscape scales. Riparian habitats, including adjacent forests, account for a small proportion of the landscape, but they have a disproportionately high ecological value (Morgan and Lashmar 1993, Naiman et al. 1993, Moore and Richardson 2003, Li at al. 2024). Human modification and loss of riparian habitat is a continuing trend globally (Riis et al. 2020, Urbanic 2022) and in British Columbia (Li et al. 2024). In some parts of my study area, riparian corridors were the only remnant forest left behind due to regulatory requirements that limit harvest close to streams and lakeshores. If riparian forest cover becomes more limited, species overlap will likely increase in these habitats. Accurate monitoring of population abundance is critical for determining and assessing trapping regulations. Canada lynx is one of the top three harvested furbearers in BC and are considered sensitive to harvest (Class 2 species; Hatler and Beal 2003). Government biologists have been asked on multiple occasions by members of the trapper community to extend harvest seasons for lynx (S. Marshall, pers. comm.). However, the absence of past studies on the habitat ecology and abundance of lynx in BC have made it difficult to make informed management decisions. During years when lynx are less abundant, non-compensatory trapping could prolong the low phase of the lynx-hare population cycle. An understanding of lynx populations in the context of regional and continent-wide fluctuations becomes especially relevant to decisions on trapping quotas and the length of the trapping season. Future monitoring using camera traps will allow us to estimate the abundance of lynx populations, including documenting the increasing or declining phase of the cycle, and adjust trapping regulations accordingly. 114 Although there are large differences in the ecology and behaviour of felid species throughout the world, there are also many similarities and behavioural consistencies. For example, the rubbing behaviour of lynx on scented objects is generally universal among felid species (Allen et al. 2016a). The survey techniques and design as well as statistical methods of my research will likely influence research on other cat species. This is especially important in areas with rare or threatened species that receive little funding for research and conservation. 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Full model results, AICc scores, and AICc weights (w) for multinomial logistic regression models representing habitat use of Canada lynx (Lynx canadensis) and American marten (Martes americana) using GPS collars and camera traps in central British Columbia, Canada, 2015–2016 and 2020–2021. Model LYNX WINTER Cover Stand Scale Disturbance + Cover Topography + Cover Riparian + Cover Canopy Cover (50 m) Disturbance + Topography 1 Topography Disturbance + Topography 2 Disturbance Null LYNX SNOW-FREE Cover Stand Scale Topography + Cover Riparian + Cover Canopy Cover (50 m) Disturbance + Cover Disturbance + Topography 1 Disturbance + Topography 2 Topography Disturbance Null MARTEN WINTER Topography + Cover Disturbance + Topography 1 Disturbance + Topography 2 Topography Riparian + Cover Cover Stand Scale Canopy Cover (50 m) Disturbance + Cover Disturbance Null K AICc ΔAICc w 5 4 7 4 4 5 4 4 3 1 8489.4 8741.5 8756.5 8786.3 8834.5 9311.3 9351.2 9353.6 9488.0 9528.4 0.0 252.1 267.1 296.9 345.1 821.9 861.8 864.2 998.6 1039.0 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 7 4 4 4 5 4 4 3 1 8248.4 8265.8 8324.9 8354.4 8356.8 8614.3 8628.3 8680.0 8794.9 8816.0 0.0 17.5 76.5 106.0 108.4 365.9 379.9 431.6 546.5 567.6 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 6 4 4 4 5 4 4 3 1 1789.3 1803.7 1807.8 1813.0 1954.5 1958.1 2010.5 2015.0 2062.7 2067.1 0.0 14.4 18.5 23.7 165.2 168.8 221.2 225.7 273.4 277.8 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 142 Appendix 2.1. Full model rankings, AICc scores, and AICc weights (w) for N-mixture models predicting abundance of Canada lynx (Lynx canadensis) and snowshoe hare (Lepus americanus) at camera traps in central British Columbia, Canada, 2015–2016 and 2020–2022. 143 Appendix 2.2. AICc scores, and AICc weights (w) for spatial-capture mark-resight (SCMR) models predicting Canada lynx (Lynx canadensis) density at camera traps in central British Columbia, Canada, 2015–2016 and 2020–2022. Model 2020 Detection probability- marking and resighting Forest age Null 2022 Detection probability- marking and resighting Null Forest age K AICc ΔAICc w 5 7 4 443.6 479.7 481.7 0.0 36.1 38.1 1.000 0.000 0.000 5 4 7 449.6 458.3 466.8 0.0 9.5 18.0 0.992 0.008 0.000 144 Appendix 3.1. Full model rankings, AICc scores, and AICc weights (w) for multinomial logistic regression models representing habitat use and co-occurrence of Canada lynx (Lynx canadensis), sympatric mesopredators, and prey at camera traps in central British Columbia, Canada during a winter of low hare abundance (2020–2021). HARE LOW WINTER Model COYOTE - LYNX Riparian + Cover Canopy Cover Edge + Cover Canopy Height + Riparian Canopy Height + Ground Cover Disturbance + Canopy Height Prey- 3 Species Disturbance Prey- 2 species null Disturbance + Edge WOLVERINE - LYNX Riparian + Cover Edge + Cover Canopy Cover Canopy Height + Ground Cover Canopy Height + Riparian Disturbance + Canopy Height Prey- 2 species Prey- 3 Species null Disturbance Disturbance + Edge FISHER - LYNX Riparian + Cover Canopy Height + Ground Cover Canopy Cover Canopy Height + Riparian Edge + Cover Disturbance + Canopy Height Prey- 2 species Prey- 3 Species null Disturbance K AICc ΔAICc w 4 5 5 4 4 3 4 4 3 1 3 111.3 118.7 120.0 123.8 132.5 133.0 143.6 148.1 148.9 152.5 153.9 0.0 7.4 8.7 12.5 21.2 21.7 32.3 36.8 37.6 41.2 42.6 0.961 0.024 0.012 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 4 5 5 4 4 3 3 4 1 4 3 143.8 146.1 146.2 153.9 157.0 160.5 181.2 181.9 182.2 182.8 182.9 0.0 2.3 2.4 10.1 13.2 16.7 37.4 38.1 38.4 39.0 39.1 0.621 0.192 0.182 0.004 0.001 0.000 0.000 0.000 0.000 0.000 0.000 4 4 5 4 5 3 3 4 1 4 148.1 149.0 150.4 150.7 151.0 156.3 176.5 176.5 179.3 177.8 0.0 0.9 2.3 2.6 2.9 8.2 28.4 28.4 31.2 29.7 0.406 0.255 0.128 0.109 0.096 0.007 0.000 0.000 0.000 0.000 145 Appendix 3.1 (continued) Disturbance + Edge HARE - LYNX Riparian + Cover Canopy Height + Riparian Canopy Cover Edge + Cover Disturbance + Canopy Height Canopy Height + Ground Cover Disturbance null Disturbance + Edge RED SQUIRREL - LYNX Riparian + Cover Canopy Height + Riparian Canopy Cover Edge + Cover Canopy Height + Ground Cover Disturbance + Canopy Height Disturbance Disturbance + Edge null 3 178.4 30.3 0.000 4 4 5 5 3 4 4 1 3 139.5 144.9 145.8 146.4 155.7 156.0 178.7 180.6 181.5 0.0 5.4 6.3 6.9 16.2 16.5 39.2 41.1 42.0 0.874 0.060 0.037 0.028 0.000 0.000 0.000 0.000 0.000 4 4 5 5 4 3 4 3 1 140.3 148.0 149.2 150.0 156.7 160.1 176.8 181.7 183.9 0.0 7.7 8.9 9.7 16.4 19.8 36.5 41.4 43.6 0.961 0.020 0.011 0.008 0.000 0.000 0.000 0.000 0.000 146 Appendix 3.2. Full model rankings, AICc scores, and AICc weights (w) for multinomial logistic regression models representing habitat use and co-occurrence of Canada lynx (Lynx canadensis), sympatric mesopredators, and prey at camera traps in central British Columbia, Canada during a winter of high hare abundance (2015–2016). HARE HIGH WINTER Model COYOTE - LYNX Canopy Cover Riparian + Cover Edge + Cover Canopy Height + Ground Cover Disturbance + Canopy Height Canopy Height + Riparian Disturbance Disturbance + Edge Prey- 2 species Prey- 3 Species null WOLVERINE - LYNX Canopy Cover Edge + Cover Riparian + Cover Canopy Height + Ground Cover Disturbance + Canopy Height Canopy Height + Riparian Disturbance + Edge Disturbance Prey- 3 Species Prey- 2 species null HARE - LYNX Riparian + Cover Canopy Cover Edge + Cover Canopy Height + Riparian Canopy Height + Ground Cover Disturbance + Canopy Height Disturbance Disturbance + Edge null RED SQUIRREL - LYNX K AICc ΔAICc w 5 4 5 4 3 4 4 3 3 4 1 138.5 145.4 145.5 151.1 155.5 159.2 161.0 163.0 165.4 166.0 168.1 0.0 6.9 6.9 12.5 17.0 20.7 22.4 24.5 26.8 27.4 29.6 0.939 0.030 0.029 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000 5 5 4 4 3 4 3 4 4 3 1 112.8 116.4 119.5 128.5 130.0 134.3 134.9 136.1 139.8 141.3 145.0 0.0 3.6 6.7 15.7 17.2 21.5 22.1 23.3 27.0 28.5 32.2 0.833 0.138 0.029 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 4 5 5 4 4 3 4 3 1 144.3 150.6 156.0 157.7 164.4 166.7 167.3 174.2 177.6 0.0 6.3 11.7 13.4 20.1 22.4 23.0 29.9 33.3 0.956 0.040 0.003 0.001 0.000 0.000 0.000 0.000 0.000 147 Appendix 3.2 (continued) Canopy Cover Riparian + Cover Disturbance Disturbance + Canopy Height Disturbance + Edge Edge + Cover Canopy Height + Ground Cover Canopy Height + Riparian null 5 4 4 3 3 5 4 4 1 151.1 158.4 160.6 170.8 171.0 173.9 177.2 178.3 185.0 0.0 7.3 9.5 19.7 19.9 22.8 26.1 27.2 33.9 0.966 0.025 0.008 0.000 0.000 0.000 0.000 0.000 0.000 148 Appendix 3.3. Full model rankings, AICc scores, and AICc weights (w) for multinomial logistic regression models representing habitat use and co-occurrence of Canada lynx (Lynx canadensis), sympatric mesopredators, and prey at camera traps in central British Columbia, Canada during a snow-free period of low hare abundance (2020–2021). HARE LOW SNOW-OFF Model COYOTE - LYNX Edge + Cover Riparian + Cover Canopy Cover Canopy Height + Riparian Canopy Height + Ground Cover Disturbance + Canopy Height Prey- 3 Species Disturbance + Edge Prey- 2 species Disturbance null WOLVERINE - LYNX Riparian + Cover Edge + Cover Canopy Cover Canopy Height + Ground Cover Prey- 3 Species Canopy Height + Riparian Prey- 2 species Disturbance null FISHER - LYNX Edge + Cover Riparian + Cover Canopy Cover Prey- 3 Species Disturbance + Canopy Height Prey- 2 species Canopy Height + Ground Cover Canopy Height + Riparian Disturbance + Edge null Disturbance HARE - LYNX K AICc ΔAICc w 5 4 5 4 4 3 4 3 3 4 1 123.6 131.2 133.6 135.8 137.1 141.0 143.1 145.3 147.6 151.5 152.9 0.0 7.6 10.0 12.2 13.5 17.4 19.5 21.7 24.0 27.9 29.3 0.969 0.021 0.006 0.002 0.001 0.000 0.000 0.000 0.000 0.000 0.000 4 5 5 4 4 4 3 4 1 108.2 111.0 112.8 117.3 117.4 117.6 118.3 132.0 133.0 0.0 2.8 4.6 9.1 9.2 9.4 10.1 23.8 24.8 0.719 0.181 0.074 0.008 0.007 0.007 0.005 0.000 0.000 5 4 5 4 3 3 4 4 3 1 4 145.7 146.5 147.3 151.9 154.4 154.6 154.7 158.2 168.6 169.7 169.7 0.0 0.8 1.6 6.2 8.7 8.9 9.0 12.5 22.9 24.0 24.0 0.451 0.310 0.201 0.021 0.006 0.005 0.005 0.001 0.000 0.000 0.000 149 Appendix 3.3 (continued) Riparian + Cover Edge + Cover Canopy Cover Disturbance + Canopy Height Canopy Height + Riparian Canopy Height + Ground Cover Disturbance null Disturbance + Edge RED SQUIRREL - LYNX Edge + Cover Riparian + Cover Canopy Cover Disturbance + Canopy Height Canopy Height + Ground Cover Canopy Height + Riparian Disturbance + Edge null Disturbance 4 5 5 3 4 4 4 1 3 148.9 151.3 153.2 158.7 159.8 160.4 172.7 174.2 175.8 0.0 2.4 4.3 9.8 10.9 11.5 23.8 25.3 26.9 0.703 0.205 0.082 0.005 0.003 0.002 0.000 0.000 0.000 5 4 5 3 4 4 3 1 4 163.8 165.6 167.5 171.1 172.3 173.5 183.7 184.5 186.9 0.0 1.8 3.7 7.3 8.5 9.7 19.9 20.7 23.1 0.620 0.253 0.098 0.016 0.009 0.005 0.000 0.000 0.000 150 Appendix 3.4. Full model rankings, AICc scores, and AICc weights (w) for multinomial logistic regression models representing habitat use and co-occurrence of Canada lynx (Lynx canadensis), sympatric mesopredators, and prey at camera traps in central British Columbia, Canada during a snow-free period of high hare abundance (2015–2016). HARE HIGH SNOW-OFF Model COYOTE - LYNX Disturbance Riparian + Cover Prey- 3 Species Disturbance + Canopy Height Canopy Cover Edge + Cover Canopy Height + Riparian Canopy Height + Ground Cover Disturbance + Edge Prey- 2 species null HARE - LYNX Edge + Cover Disturbance + Edge Canopy Cover Riparian + Cover Canopy Height + Ground Cover Disturbance Disturbance + Canopy Height Canopy Height + Riparian null RED SQUIRREL - LYNX Disturbance Riparian + Cover Canopy Cover Edge + Cover Disturbance + Canopy Height Canopy Height + Ground Cover Canopy Height + Riparian Disturbance + Edge null K AICc ΔAICc w 4 4 4 3 5 5 4 4 3 3 1 141.8 145.8 149.2 150.1 150.8 151.0 152.5 153.6 154.7 157.4 159.3 0.0 4.0 7.4 8.3 9.0 9.2 10.7 11.8 12.9 15.6 17.5 0.827 0.113 0.021 0.013 0.009 0.008 0.004 0.002 0.001 0.000 0.000 5 3 5 4 4 4 3 4 1 132.4 148.3 149.7 150.1 156.5 157.7 158.2 162.7 167.1 0.0 15.9 17.3 17.7 24.1 25.3 25.8 30.3 34.7 0.999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 4 4 5 5 3 4 4 3 1 151.6 159.4 161.5 162.5 165.5 166.5 166.9 168.6 172.1 0.0 7.8 9.9 10.9 13.9 14.9 15.3 17.0 20.5 0.967 0.020 0.007 0.004 0.001 0.001 0.000 0.000 0.000 151